This package contains a collection of vignettes to perform the analysis of pairwise genome alignments between Oikopleura genomes.
The vignettes in the Supplemental Material section of the header menu are related to our preprint “Extreme genome scrambling in cryptic Oikopleura dioica species”.
The core functions used here are maintained in our GenomicBreaks R package, which is fully documented at: https://oist.github.io/GenomicBreaks.
See the “Get Started“ vignette for details on how to run the computations.