Operon conservation analysis
Michael Mansfield
Charles Plessy
20 November, 2023
Source:vignettes/OperonConservation.Rmd
OperonConservation.RmdLoad packages and data
See ?OikScrambling:::loadAllGenomes,
?OikScrambling:::loadAllTranscriptsGR, and
vignette("LoadGenomicBreaks", package = "OikScrambling")
for how the different objects are prepared.
library('OikScrambling') |> suppressPackageStartupMessages()
library('GenomicFeatures') |> suppressPackageStartupMessages()
library('ggplot2') |> suppressPackageStartupMessages()
library('patchwork') |> suppressPackageStartupMessages()
library('ggvenn') |> suppressPackageStartupMessages() # Needed for Euler (Venn) diagrams
library('stringdist') |> suppressPackageStartupMessages() # Needed for inexact operon comparisons
genomes <- OikScrambling:::loadAllGenomes(compat = F)## Warning in runHook(".onLoad", env, package.lib, package): input string
## 'Génoscope' cannot be translated from 'ANSI_X3.4-1968' to UTF-8, but is valid
## UTF-8
## Warning in runHook(".onLoad", env, package.lib, package): input string
## 'Génoscope' cannot be translated from 'ANSI_X3.4-1968' to UTF-8, but is valid
## UTF-8
# Cannot use Knitr cache as long as "annot" objects are used.
annots <- OikScrambling:::loadAllAnnotations() |> suppressWarnings()
genes <- sapply(annots, function(a) sort(genes(a))) |> SimpleList()
load("BreakPoints.Rdata")Operons and operon conservation
Collinear genes in oiks can be arranged into operons. Are these collinear genes retained between species?
This vignette provides some details about the method we use to
Compute operons
The following function generates sets of collinear genes separated by
at most window base pairs on either side. See the
vignette("OperonDetection", package = "OikScrambling") for
details.
operons <- lapply(annots, \(a) {a |> genes() |> OikScrambling:::calcOperons(window = 500) }) |> SimpleList() |> suppressWarnings()
operons$Nor <- OikScrambling:::calcOperons(window = 500, transcripts(annots$Nor) |> reduce()) |> suppressWarnings()
sapply(operons, length)## Oki Osa Bar Kum Aom Nor Ply Ros
## 3124 2741 2379 2974 2648 2996 1088 1472## $Oki
##
## 2 3 4 5 6 7 8 9 10 11 14
## 1943 647 259 134 69 33 19 10 6 3 1
##
## $Osa
##
## 2 3 4 5 6 7 8 9 10 11 12 13
## 1714 557 248 98 63 32 13 10 1 3 1 1
##
## $Bar
##
## 2 3 4 5 6 7 8 9 10 11 12 13 14 17
## 1450 475 221 106 57 30 23 9 3 1 1 1 1 1
##
## $Kum
##
## 2 3 4 5 6 7 8 9 10 11 12 13 14 17
## 1855 648 233 114 56 28 18 4 7 6 1 1 2 1
##
## $Aom
##
## 2 3 4 5 6 7 8 9 10 11 12 14
## 1689 492 239 107 52 36 14 10 3 4 1 1
##
## $Nor
##
## 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
## 1724 562 264 138 93 65 38 40 16 21 11 10 3 4 3 1
## 20 22
## 1 2
##
## $Ply
##
## 2 3 4 5 6 7 8 9 13 14 15
## 937 114 22 6 2 1 1 1 1 1 2
##
## $Ros
##
## 2 3 4 5 6 7 9 10 11 21 26 29
## 1262 163 33 5 1 1 1 1 1 1 1 2Operons with different intergenic distances
operon_windows <- c(25, 50, 75, 100, 150, 250, 300, 400, 500, 600, 750, 1000)
operon_window_factor <- lapply(operon_windows, function(x) paste0("cutoff_", x)) |> unlist()
operon_window_factor <- factor(operon_window_factor, levels=operon_window_factor)
operons_diff_sizes <- sapply(c("Oki", "Osa", "Bar"), function(sp) {
o <- lapply(operon_windows, function(size) {
genes[[sp]] |> OikScrambling:::calcOperons(window = size) |> suppressWarnings()
}) |> SimpleList()
names(o) <- operon_window_factor
o
}) |> SimpleList()
names(operons_diff_sizes) <- c("Oki", "Osa", "Bar")
# How many operons do we get per species at these cutoffs?
operons_diff_sizes_df <- rbind(
do.call(rbind, lapply(operons_diff_sizes$Oki, function(x) data.frame(n_operons=length(x), mean_operon_size=mean(x$n)))) |> tibble::rownames_to_column() |> dplyr::mutate(species="Okinawa") |> dplyr::rename(cutoff=rowname) ,
do.call(rbind, lapply(operons_diff_sizes$Osa, function(x) data.frame(n_operons=length(x), mean_operon_size=mean(x$n)))) |> tibble::rownames_to_column() |> dplyr::mutate(species="Osaka") |> dplyr::rename(cutoff=rowname),
do.call(rbind, lapply(operons_diff_sizes$Bar, function(x) data.frame(n_operons=length(x), mean_operon_size=mean(x$n)))) |> tibble::rownames_to_column() |> dplyr::mutate(species="Barcelona") |> dplyr::rename(cutoff=rowname)
)
p1 <- ggplot(operons_diff_sizes_df) + aes(x=factor(cutoff, levels=operon_window_factor), y=n_operons, fill=species) + geom_bar(stat='identity', position='dodge') + ggtitle("Number of operons vs. distance cutoffs") + xlab('Distance cutoff') + theme(axis.text.x = element_text(angle = 90))
p2 <- ggplot(operons_diff_sizes_df) + aes(x=factor(cutoff, levels=operon_window_factor), y=mean_operon_size, fill=species) + geom_bar(stat='identity', position='dodge') + ggtitle("Mean operon size vs. distance cutoffs") + xlab('Distance cutoff') + theme(axis.text.x = element_text(angle = 90))
(p1 / p2)
Effect of intergenic distance cutoff on operon sizes
# Inspect the distribution of operon sizes by operon cutoff.
op_df_oki <- do.call(rbind, lapply(names(operons_diff_sizes$Oki), function(x) as.data.frame(table(operons_diff_sizes$Oki[[x]]$n)) |> dplyr::mutate(set=x) )) |> dplyr::mutate(Var1=as.factor(as.numeric(unfactor(Var1)))) |> dplyr::mutate(set=factor(set, levels=unique(set))) |> dplyr::rename(operon_size=Var1, count=Freq)
op_df_oki |> ggplot() + aes(x=operon_size, y=count*10, fill=set) + geom_bar(stat='identity', position='dodge') + ylab("Frequency") + xlab("Operon size") + guides(fill=guide_legend(title="cutoff")) + ggtitle("Okinawa: Number of operons of size X vs. cutoff") + scale_x_discrete(drop=TRUE) + scale_fill_discrete(drop=TRUE) + facet_wrap(~set, nrow=1)
op_df_osa <- do.call(rbind, lapply(names(operons_diff_sizes$Osa), function(x) as.data.frame(table(operons_diff_sizes$Osa[[x]]$n)) |> dplyr::mutate(set=x) )) |> dplyr::mutate(Var1=as.factor(as.numeric(unfactor(Var1)))) |> dplyr::mutate(set=factor(set, levels=unique(set))) |> dplyr::rename(operon_size=Var1, count=Freq)
op_df_osa |> ggplot() + aes(x=operon_size, y=count*10, fill=set) + geom_bar(stat='identity', position='dodge') + ylab("Frequency") + xlab("Operon size") + guides(fill=guide_legend(title="cutoff")) + ggtitle("Osaka: Number of operons of size X vs. cutoff") + scale_x_discrete(drop=TRUE) + scale_fill_discrete(drop=TRUE) + facet_wrap(~set, nrow=1)
op_df_bar <- do.call(rbind, lapply(names(operons_diff_sizes$Bar), function(x) as.data.frame(table(operons_diff_sizes$Bar[[x]]$n)) |> dplyr::mutate(set=x) )) |> dplyr::mutate(Var1=as.factor(as.numeric(unfactor(Var1)))) |> dplyr::mutate(set=factor(set, levels=unique(set))) |> dplyr::rename(operon_size=Var1, count=Freq)
op_df_bar |> ggplot() + aes(x=operon_size, y=count*10, fill=set) + geom_bar(stat='identity', position='dodge') + ylab("Frequency") + xlab("Operon size") + guides(fill=guide_legend(title="cutoff")) + ggtitle("Barcelona: Number of operons of size X vs. cutoff") + scale_x_discrete(drop=TRUE) + scale_fill_discrete(drop=TRUE) + facet_wrap(~set, nrow=1)
Identifying conserved operons by orthogroups
The easiest way to identify conserved operons in each species is to define them using orthologues. Then, an operon is exactly equal to another if it matches an operon exactly in another species.
First, load the orthogroups and annotate the gene
GRanges with orthogroup IDs.
pho <- read.delim(system.file("extdata/OrthoFinder/N19.tsv", package="BreakpointsData"))
pho <- pho[,!apply(pho, 2, function(d) all(is.na(d)))]
colnames(pho) <- c('HOG', 'OG', 'GTPC', 'Aom', 'Bar', 'Kum', 'Oki', 'Osa', 'Nor')
of_to_list <- function(of_ids, gene_id_separator='\\.', gene_id_field=2){
of_list <- strsplit(of_ids, ', ')
lapply(of_list, function(hog) {
if(length(hog)==0){
return(NA)
} else {
r <- lapply(hog, function(h) unlist(strsplit(h, gene_id_separator))[gene_id_field]) |> unlist()
r
}
}) |> CharacterList()
}
pho$Aom <- of_to_list(pho$Aom, gene_id_field = 2)
pho$Bar <- of_to_list(pho$Bar, gene_id_field = 2)
pho$Kum <- of_to_list(pho$Kum, gene_id_field = 2)
pho$Oki <- of_to_list(pho$Oki, gene_id_field = 3)
pho$Osa <- of_to_list(pho$Osa, gene_id_field = 3)
pho$Nor <- of_to_list(pho$Nor, gene_id_field = 2)
pho <- DataFrame(pho)The easiest way to translate genes in one species to genes in another is with orthogroups. Computationally, I turn gene IDs into their orthogroup labels, then look for matching “words” in the two species.
# Convenience functions to extract the PHO index based on a gene ID of one species
pho_of_gene <- function(pho, sp, gene_id) {
sp_df <- as.data.frame(pho[[sp]])
index <- sp_df$group[which(sp_df$value == gene_id)]
pho[index,]
}
pho_of_gene(pho, "Oki", "g100")## DataFrame with 1 row and 9 columns
## HOG OG GTPC Aom Bar
## <character> <character> <character> <CharacterList> <CharacterList>
## 1 N19.HOG0000300 OG0000009 n210 g13634 g3848
## Kum Oki Osa Nor
## <CharacterList> <CharacterList> <CharacterList> <CharacterList>
## 1 g1573 g100,g4556 g3533 GSOIDT00014550001
hog_of_gene <- function(pho, sp, gene_id) {
sp_df <- as.data.frame(pho[[sp]])
index <- sp_df$group[which(sp_df$value == gene_id)]
pho$HOG[index]
}
hog_of_gene(pho, "Oki", "g100")## [1] "N19.HOG0000300"
pho_of_genes <- function(pho, sp, gene_ids) {
sp_df <- as.data.frame(pho[[sp]])
indices <- lapply(gene_ids, function(x) {
index <- sp_df$group[which(sp_df$value == x)]
}) |> unlist()
pho[indices,]
}
pho_of_genes(pho, "Oki", c("g100", "g101"))## DataFrame with 2 rows and 9 columns
## HOG OG GTPC Aom Bar
## <character> <character> <character> <CharacterList> <CharacterList>
## 1 N19.HOG0000300 OG0000009 n210 g13634 g3848
## 2 N19.HOG0017918 OG0031503 - NA NA
## Kum Oki Osa Nor
## <CharacterList> <CharacterList> <CharacterList> <CharacterList>
## 1 g1573 g100,g4556 g3533 GSOIDT00014550001
## 2 g3685 g101 NA NA
hog_of_genes <- function(pho, sp, gene_ids, what="HOG") {
sp_df <- as.data.frame(pho[[sp]])
indices <- lapply(gene_ids, function(x) {
group <- sp_df$group[which(sp_df$value == x)]
if(length(group)>0){
index <- sp_df$group[which(sp_df$value == x)]
} else {
index <- NA
}
index
}) |> unlist()
pho[[what]][indices]
}
hog_of_genes(pho, "Oki", c("g654654654", "g100", "g101"), what="HOG")## [1] NA "N19.HOG0000300" "N19.HOG0017918"
hog_of_genes(pho, "Oki", c("g654654654", "g100", "g101"), what="OG")## [1] NA "OG0000009" "OG0031503"
genes_hogs <- sapply(c("Oki", "Osa", "Bar"), function(sp) {
g <- genes[[sp]]
g$HOG <- hog_of_genes(pho, sp, g$gene_id, what = "HOG")
g$OG <- hog_of_genes(pho, sp, g$gene_id, what = "OG")
g <- sort(g, ignore.strand=TRUE)
g
}) |> SimpleList()
# Annotate operons GR with HOG names
annotate_operons_with_hogs <- function(op_gr, hog_gr) {
if(is.null(names(op_gr))){
names(op_gr) <- paste0("o", 1:length(op_gr))
}
op_gr_annot <- op_gr$gene_id |> as.data.frame()
op_gr_annot$HOG <- hog_gr$HOG[match(op_gr_annot$value, hog_gr$gene_id)]
op_gr_annot$OG <- hog_gr$OG[match(op_gr_annot$value, hog_gr$gene_id)]
op_hogs <- split(op_gr_annot$HOG, op_gr_annot$group)
names(op_hogs) <- names(op_gr)
op_gr$HOGs <- CharacterList(op_hogs)
op_ogs <- split(op_gr_annot$OG, op_gr_annot$group)
names(op_ogs) <- names(op_gr)
op_gr$OGs <- CharacterList(op_ogs)
op_gr
}
operons_hogs <- SimpleList()
operons_hogs$Oki <- annotate_operons_with_hogs(operons$Oki, genes_hogs$Oki)
operons_hogs$Osa <- annotate_operons_with_hogs(operons$Osa, genes_hogs$Osa)
operons_hogs$Bar <- annotate_operons_with_hogs(operons$Bar, genes_hogs$Bar)
# Note that NA values for HOG are unique case. An operon of NA__NA should not
# match a second NA__NA in that same species, or in any other species.
# So, NA-only operons need to be given unique names for each species.
hog_characterlist_to_hog_id <- function(op_gr, cl_name="HOGs", sep="__", sp=NULL) {
op_strands <- as.character(strand(op_gr))
cl <- mcols(op_gr)[[cl_name]]
sp_specific_operon_count <- 0
hog_id_vector <- c()
for(i in 1:length(cl)) {
op_strand <- op_strands[i]
x <- cl[[i]]
if(all(is.na(x))){
sp_specific_operon_count <- sp_specific_operon_count + 1
hog_id <- paste0(paste0(x, collapse=sep), sep, sp, sp_specific_operon_count, collapse=sep )
} else {
if(op_strand == "+") {
hog_id <- paste0(x, collapse=sep)
} else {
hog_id <- paste0(rev(x), collapse=sep)
}
}
hog_id_vector[i] <- hog_id
}
return(hog_id_vector)
}
hog_characterlist_to_hog_id(operons_hogs$Oki, sp="Oki")## [1] "N19.HOG0002381__N19.HOG0016323"
## [2] "N19.HOG0012732__N19.HOG0015448"
## [3] "N19.HOG0015555__N19.HOG0016353"
## [4] "N19.HOG0011933__N19.HOG0010123"
## [5] "N19.HOG0013815__N19.HOG0013815"
## [6] "N19.HOG0001417__N19.HOG0011241"
## [7] "N19.HOG0001655__N19.HOG0001659__N19.HOG0010147"
## [8] "N19.HOG0006333__N19.HOG0012846"
## [9] "N19.HOG0003358__N19.HOG0001579__N19.HOG0002104"
## [10] "N19.HOG0012959__N19.HOG0012959__N19.HOG0007048__N19.HOG0016144"
## [11] "N19.HOG0005846__N19.HOG0005848"
## [12] "N19.HOG0017039__N19.HOG0002381"
## [13] "N19.HOG0013733__N19.HOG0000300"
## [14] "N19.HOG0004436__N19.HOG0007035"
## [15] "N19.HOG0004693__N19.HOG0004694"
## [16] "N19.HOG0018186__N19.HOG0012639"
## [17] "N19.HOG0017919__N19.HOG0017920"
## [18] "N19.HOG0010453__N19.HOG0007625__N19.HOG0015112__N19.HOG0016516"
## [19] "N19.HOG0012579__N19.HOG0012573"
## [20] "N19.HOG0011932__N19.HOG0011932"
## [21] "N19.HOG0007629__N19.HOG0003398"
## [22] "N19.HOG0016938__N19.HOG0012978__N19.HOG0002746__N19.HOG0016939"
## [23] "N19.HOG0016769__N19.HOG0015150"
## [24] "N19.HOG0015122__NA"
## [25] "N19.HOG0007619__N19.HOG0013178"
## [26] "N19.HOG0013527__N19.HOG0017923"
## [27] "N19.HOG0005819__N19.HOG0001810__N19.HOG0012557"
## [28] "N19.HOG0001993__N19.HOG0007627"
## [29] "N19.HOG0012565__N19.HOG0012565__N19.HOG0003634__N19.HOG0012043"
## [30] "N19.HOG0015141__N19.HOG0012472__N19.HOG0004450"
## [31] "N19.HOG0004178__N19.HOG0012667"
## [32] "N19.HOG0001194__N19.HOG0015143"
## [33] "N19.HOG0006532__N19.HOG0017924"
## [34] "N19.HOG0013530__N19.HOG0000223"
## [35] "N19.HOG0000434__N19.HOG0004664"
## [36] "N19.HOG0001853__N19.HOG0012770__N19.HOG0012378"
## [37] "N19.HOG0005999__N19.HOG0006000"
## [38] "N19.HOG0010516__N19.HOG0010515"
## [39] "N19.HOG0014126__N19.HOG0016835__N19.HOG0003273__N19.HOG0016234"
## [40] "N19.HOG0017933__N19.HOG0013545__N19.HOG0008864"
## [41] "N19.HOG0013184__N19.HOG0013184__N19.HOG0010890"
## [42] "N19.HOG0016149__N19.HOG0001868__N19.HOG0000069"
## [43] "N19.HOG0015844__N19.HOG0013544"
## [44] "N19.HOG0014283__N19.HOG0017935__N19.HOG0014284"
## [45] "N19.HOG0008411__N19.HOG0008653__N19.HOG0012554"
## [46] "N19.HOG0013320__N19.HOG0002790"
## [47] "N19.HOG0016757__N19.HOG0014309"
## [48] "N19.HOG0014297__N19.HOG0015038__N19.HOG0014156"
## [49] "N19.HOG0000871__N19.HOG0012347"
## [50] "N19.HOG0014291__N19.HOG0010640__N19.HOG0015424__N19.HOG0015424"
## [51] "N19.HOG0006793__N19.HOG0006794"
## [52] "N19.HOG0005940__N19.HOG0001013"
## [53] "N19.HOG0000375__N19.HOG0018215"
## [54] "N19.HOG0004215__N19.HOG0012776__N19.HOG0000438__N19.HOG0001413"
## [55] "N19.HOG0002513__N19.HOG0002510__N19.HOG0002511"
## [56] "N19.HOG0001044__N19.HOG0013843"
## [57] "N19.HOG0000514__N19.HOG0000514"
## [58] "N19.HOG0012351__NA"
## [59] "N19.HOG0014082__N19.HOG0008138"
## [60] "N19.HOG0003513__N19.HOG0015747"
## [61] "NA__N19.HOG0007396"
## [62] "N19.HOG0004371__N19.HOG0001228"
## [63] "N19.HOG0000060__N19.HOG0000839__N19.HOG0000839"
## [64] "N19.HOG0005456__N19.HOG0002664"
## [65] "N19.HOG0001210__N19.HOG0014142"
## [66] "N19.HOG0011463__N19.HOG0011463"
## [67] "N19.HOG0016943__N19.HOG0000928__N19.HOG0008845"
## [68] "N19.HOG0007076__N19.HOG0002125__N19.HOG0002124"
## [69] "N19.HOG0015499__N19.HOG0011505"
## [70] "N19.HOG0005355__N19.HOG0003125"
## [71] "N19.HOG0013201__N19.HOG0017038__N19.HOG0011551"
## [72] "N19.HOG0016354__N19.HOG0016354"
## [73] "N19.HOG0012278__N19.HOG0001081"
## [74] "N19.HOG0016944__N19.HOG0004180"
## [75] "N19.HOG0012882__N19.HOG0017245"
## [76] "N19.HOG0012881__N19.HOG0002620"
## [77] "N19.HOG0012570__N19.HOG0012569"
## [78] "N19.HOG0001474__N19.HOG0001474__N19.HOG0017937"
## [79] "N19.HOG0013524__N19.HOG0014287__N19.HOG0013526"
## [80] "N19.HOG0013523__N19.HOG0016532"
## [81] "N19.HOG0004932__N19.HOG0016403__N19.HOG0012581"
## [82] "N19.HOG0003629__N19.HOG0013679"
## [83] "N19.HOG0002822__N19.HOG0012873"
## [84] "N19.HOG0013421__N19.HOG0013421__N19.HOG0017938__N19.HOG0012962"
## [85] "N19.HOG0012120__N19.HOG0012121__N19.HOG0006404"
## [86] "N19.HOG0008151__N19.HOG0002425__N19.HOG0010464__N19.HOG0006027"
## [87] "N19.HOG0012475__N19.HOG0013813__N19.HOG0017939"
## [88] "N19.HOG0001791__N19.HOG0013512__N19.HOG0005423"
## [89] "N19.HOG0004693__N19.HOG0004849__N19.HOG0003672__N19.HOG0012559__N19.HOG0011864"
## [90] "N19.HOG0004856__N19.HOG0004859"
## [91] "NA__N19.HOG0010352__NA"
## [92] "NA__N19.HOG0004859"
## [93] "N19.HOG0017940__N19.HOG0016145"
## [94] "N19.HOG0012563__N19.HOG0015127"
## [95] "N19.HOG0002552__N19.HOG0015113"
## [96] "N19.HOG0013358__N19.HOG0013358"
## [97] "N19.HOG0001339__N19.HOG0010865"
## [98] "N19.HOG0015123__N19.HOG0007265__N19.HOG0004909"
## [99] "N19.HOG0001701__N19.HOG0003013"
## [100] "N19.HOG0006264__N19.HOG0015745"
## [101] "N19.HOG0012567__N19.HOG0012567__N19.HOG0016192__N19.HOG0014485"
## [102] "N19.HOG0003052__N19.HOG0008116"
## [103] "N19.HOG0010578__N19.HOG0011481__N19.HOG0008037__N19.HOG0007994"
## [104] "N19.HOG0001473__N19.HOG0017477__N19.HOG0015131"
## [105] "N19.HOG0010694__N19.HOG0009774__N19.HOG0005388"
## [106] "N19.HOG0010497__N19.HOG0016359"
## [107] "N19.HOG0000253__N19.HOG0016156"
## [108] "N19.HOG0000806__N19.HOG0013529"
## [109] "N19.HOG0001323__N19.HOG0004693"
## [110] "N19.HOG0011029__NA__N19.HOG0015689"
## [111] "N19.HOG0012276__N19.HOG0012276"
## [112] "N19.HOG0004920__N19.HOG0004336__N19.HOG0014450"
## [113] "N19.HOG0014451__N19.HOG0013628"
## [114] "N19.HOG0013168__N19.HOG0013168"
## [115] "N19.HOG0006372__N19.HOG0014125"
## [116] "NA__N19.HOG0005015"
## [117] "N19.HOG0008060__N19.HOG0001151"
## [118] "N19.HOG0007037__N19.HOG0002541"
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## [144] "N19.HOG0006797__N19.HOG0005835"
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## [148] "N19.HOG0000194__N19.HOG0003510"
## [149] "N19.HOG0013721__N19.HOG0007680"
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## [151] "N19.HOG0014970__NA"
## [152] "N19.HOG0003492__N19.HOG0016122__N19.HOG0007449__N19.HOG0007449"
## [153] "N19.HOG0011125__N19.HOG0009560"
## [154] "N19.HOG0001615__N19.HOG0001615__N19.HOG0003510__N19.HOG0010864"
## [155] "N19.HOG0000022__N19.HOG0008414__N19.HOG0008152"
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## [157] "N19.HOG0013175__N19.HOG0013176"
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## [162] "N19.HOG0001073__N19.HOG0007583"
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## [164] "N19.HOG0016304__N19.HOG0011613"
## [165] "NA__N19.HOG0000643__N19.HOG0011763"
## [166] "N19.HOG0007888__N19.HOG0002394__N19.HOG0002400"
## [167] "N19.HOG0008898__N19.HOG0002755__N19.HOG0012972"
## [168] "N19.HOG0015744__N19.HOG0001612"
## [169] "N19.HOG0002825__N19.HOG0012873"
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## [171] "N19.HOG0001370__N19.HOG0015697"
## [172] "N19.HOG0015851__N19.HOG0004971"
## [173] "N19.HOG0014301__N19.HOG0001578"
## [174] "N19.HOG0008579__N19.HOG0000886"
## [175] "N19.HOG0010284__N19.HOG0010283__NA"
## [176] "N19.HOG0004297__N19.HOG0014483"
## [177] "N19.HOG0000500__N19.HOG0010820__N19.HOG0006502__N19.HOG0017959"
## [178] "N19.HOG0011648__N19.HOG0015130"
## [179] "N19.HOG0001730__N19.HOG0017961"
## [180] "N19.HOG0011319__N19.HOG0007888__N19.HOG0002397__N19.HOG0002400__N19.HOG0002400"
## [181] "N19.HOG0002538__N19.HOG0003109"
## [182] "N19.HOG0007896__N19.HOG0006859__N19.HOG0013903"
## [183] "N19.HOG0005290__N19.HOG0005290__N19.HOG0004574"
## [184] "NA__N19.HOG0012479__N19.HOG0012478__N19.HOG0016962__N19.HOG0003913"
## [185] "N19.HOG0007722__N19.HOG0017964"
## [186] "N19.HOG0010835__N19.HOG0010834"
## [187] "N19.HOG0003618__N19.HOG0003911"
## [188] "N19.HOG0000850__N19.HOG0000850"
## [189] "N19.HOG0013811__N19.HOG0012027__N19.HOG0013197"
## [190] "N19.HOG0017035__N19.HOG0006352"
## [191] "N19.HOG0009218__N19.HOG0011085"
## [192] "N19.HOG0013196__N19.HOG0018184"
## [193] "N19.HOG0001738__N19.HOG0001737"
## [194] "N19.HOG0016541__N19.HOG0002727__N19.HOG0011035__N19.HOG0011035"
## [195] "N19.HOG0013522__N19.HOG0014916"
## [196] "N19.HOG0007628__N19.HOG0008659"
## [197] "N19.HOG0007572__N19.HOG0014862"
## [198] "N19.HOG0012976__N19.HOG0013539__N19.HOG0002810"
## [199] "N19.HOG0001477__N19.HOG0016963__N19.HOG0002839__N19.HOG0002836"
## [200] "N19.HOG0002633__N19.HOG0002633"
## [201] "N19.HOG0000668__N19.HOG0000668"
## [202] "N19.HOG0016966__N19.HOG0007791__N19.HOG0005528"
## [203] "N19.HOG0002360__N19.HOG0003732"
## [204] "N19.HOG0015251__N19.HOG0001881__N19.HOG0001881"
## [205] "N19.HOG0001843__N19.HOG0017310"
## [206] "N19.HOG0018039__N19.HOG0007462"
## [207] "N19.HOG0018041__N19.HOG0002381"
## [208] "N19.HOG0018043__N19.HOG0018042"
## [209] "N19.HOG0009404__N19.HOG0012732"
## [210] "N19.HOG0001432__N19.HOG0001432__N19.HOG0001432"
## [211] "N19.HOG0003567__N19.HOG0009142__N19.HOG0009772__N19.HOG0005013"
## [212] "N19.HOG0010417__N19.HOG0001976"
## [213] "N19.HOG0014124__N19.HOG0014300"
## [214] "N19.HOG0002200__N19.HOG0009563"
## [215] "N19.HOG0003512__N19.HOG0003507__N19.HOG0003512"
## [216] "N19.HOG0013963__N19.HOG0011430"
## [217] "N19.HOG0016715__N19.HOG0017267"
## [218] "NA__NA__N19.HOG0001795"
## [219] "N19.HOG0013537__N19.HOG0016161__N19.HOG0010316"
## [220] "N19.HOG0017978__N19.HOG0011649"
## [221] "N19.HOG0001013__N19.HOG0001188"
## [222] "N19.HOG0004162__NA"
## [223] "N19.HOG0008610__N19.HOG0016182__N19.HOG0008611"
## [224] "N19.HOG0001704__N19.HOG0003431"
## [225] "N19.HOG0007631__N19.HOG0013791"
## [226] "N19.HOG0017819__N19.HOG0017820__N19.HOG0017821__N19.HOG0016907__N19.HOG0016907"
## [227] "N19.HOG0017824__N19.HOG0017823"
## [228] "N19.HOG0014680__N19.HOG0008358"
## [229] "N19.HOG0009908__N19.HOG0004436"
## [230] "N19.HOG0003506__N19.HOG0015534"
## [231] "N19.HOG0010995__N19.HOG0010995__N19.HOG0010995"
## [232] "N19.HOG0009208__N19.HOG0011730__N19.HOG0005441__N19.HOG0000001"
## [233] "N19.HOG0003358__N19.HOG0003359"
## [234] "N19.HOG0006700__N19.HOG0006699"
## [235] "N19.HOG0011855__N19.HOG0002337"
## [236] "N19.HOG0000482__N19.HOG0000471__N19.HOG0013646"
## [237] "N19.HOG0008684__N19.HOG0017836"
## [238] "N19.HOG0009155__N19.HOG0005812"
## [239] "NA__N19.HOG0006715"
## [240] "NA__N19.HOG0009332"
## [241] "N19.HOG0000111__N19.HOG0004418"
## [242] "N19.HOG0018199__N19.HOG0004112"
## [243] "N19.HOG0005345__N19.HOG0015322__N19.HOG0009219__N19.HOG0010160__N19.HOG0008198"
## [244] "N19.HOG0000679__N19.HOG0013195"
## [245] "N19.HOG0001936__N19.HOG0001936"
## [246] "N19.HOG0010516__N19.HOG0010515__N19.HOG0013803__N19.HOG0013803"
## [247] "N19.HOG0016848__N19.HOG0012019"
## [248] "N19.HOG0017665__N19.HOG0017664"
## [249] "N19.HOG0011002__N19.HOG0006350__N19.HOG0006350"
## [250] "N19.HOG0016847__N19.HOG0015506"
## [251] "N19.HOG0001394__N19.HOG0004626__N19.HOG0006658__N19.HOG0007867__N19.HOG0008670"
## [252] "N19.HOG0006808__NA"
## [253] "N19.HOG0013018__N19.HOG0013601"
## [254] "N19.HOG0010521__N19.HOG0009384__N19.HOG0000271"
## [255] "N19.HOG0001202__N19.HOG0001201"
## [256] "N19.HOG0003800__N19.HOG0003797"
## [257] "N19.HOG0009152__N19.HOG0018200__N19.HOG0008497__N19.HOG0006022__N19.HOG0006022"
## [258] "N19.HOG0006022__N19.HOG0004871__N19.HOG0004927__N19.HOG0007095__N19.HOG0006762__N19.HOG0010574__N19.HOG0006550"
## [259] "N19.HOG0016912__N19.HOG0013572"
## [260] "N19.HOG0014437__N19.HOG0007921"
## [261] "N19.HOG0003492__N19.HOG0004849__N19.HOG0002107__N19.HOG0002231"
## [262] "N19.HOG0013195__N19.HOG0013195"
## [263] "N19.HOG0015259__N19.HOG0008415__N19.HOG0015438__N19.HOG0002798"
## [264] "N19.HOG0008954__N19.HOG0010721"
## [265] "N19.HOG0006203__N19.HOG0008230"
## [266] "N19.HOG0011744__N19.HOG0009028"
## [267] "N19.HOG0009452__N19.HOG0014763"
## [268] "N19.HOG0002406__N19.HOG0016482"
## [269] "N19.HOG0000039__N19.HOG0012289"
## [270] "N19.HOG0012289__N19.HOG0013357__N19.HOG0014745__N19.HOG0014745__N19.HOG0014745__N19.HOG0010538"
## [271] "N19.HOG0014692__N19.HOG0013065"
## [272] "N19.HOG0012268__N19.HOG0012268"
## [273] "N19.HOG0012634__N19.HOG0015225"
## [274] "N19.HOG0004011__N19.HOG0010714"
## [275] "N19.HOG0002681__N19.HOG0002681"
## [276] "NA__N19.HOG0003505__N19.HOG0001511"
## [277] "N19.HOG0005466__N19.HOG0005467"
## [278] "N19.HOG0008580__N19.HOG0008580__N19.HOG0000287"
## [279] "N19.HOG0000719__N19.HOG0014444"
## [280] "N19.HOG0014756__N19.HOG0010843__NA"
## [281] "N19.HOG0003656__N19.HOG0010843"
## [282] "NA__NA__Oki1"
## [283] "N19.HOG0003656__N19.HOG0010843"
## [284] "N19.HOG0001503__N19.HOG0007741"
## [285] "N19.HOG0006816__N19.HOG0010099"
## [286] "N19.HOG0010099__NA__N19.HOG0016242"
## [287] "N19.HOG0004414__N19.HOG0014386"
## [288] "N19.HOG0003976__N19.HOG0003976"
## [289] "N19.HOG0005750__N19.HOG0009148"
## [290] "N19.HOG0005881__N19.HOG0008916"
## [291] "N19.HOG0000836__NA"
## [292] "N19.HOG0010709__N19.HOG0010709__N19.HOG0002962"
## [293] "N19.HOG0003161__N19.HOG0002097"
## [294] "N19.HOG0003357__N19.HOG0002372__N19.HOG0001251"
## [295] "N19.HOG0017825__N19.HOG0013048__N19.HOG0001772"
## [296] "N19.HOG0002784__N19.HOG0005016"
## [297] "N19.HOG0007552__N19.HOG0007551"
## [298] "N19.HOG0010609__N19.HOG0010609__N19.HOG0013586"
## [299] "N19.HOG0007766__N19.HOG0017816"
## [300] "N19.HOG0005123__N19.HOG0005122"
## [301] "NA__N19.HOG0016979"
## [302] "N19.HOG0014381__N19.HOG0008681"
## [303] "N19.HOG0010564__N19.HOG0016906"
## [304] "N19.HOG0008005__N19.HOG0009793__N19.HOG0009792__N19.HOG0007872"
## [305] "N19.HOG0007643__N19.HOG0004541"
## [306] "N19.HOG0013589__N19.HOG0014382"
## [307] "N19.HOG0011157__N19.HOG0006323__N19.HOG0008682__N19.HOG0004015"
## [308] "N19.HOG0009834__N19.HOG0008683__N19.HOG0010941__N19.HOG0004356"
## [309] "N19.HOG0009377__N19.HOG0008921__N19.HOG0004979"
## [310] "N19.HOG0014383__N19.HOG0006483__N19.HOG0007465"
## [311] "N19.HOG0006190__N19.HOG0009857"
## [312] "N19.HOG0010099__N19.HOG0016242"
## [313] "N19.HOG0002252__N19.HOG0015833"
## [314] "N19.HOG0005649__N19.HOG0005648"
## [315] "N19.HOG0007296__N19.HOG0004836"
## [316] "N19.HOG0011759__N19.HOG0011759__N19.HOG0013774"
## [317] "N19.HOG0011760__N19.HOG0000965__N19.HOG0002920"
## [318] "N19.HOG0003514__N19.HOG0002423"
## [319] "N19.HOG0016237__N19.HOG0001348"
## [320] "N19.HOG0008752__N19.HOG0007092__N19.HOG0009580__N19.HOG0008919__N19.HOG0007034__N19.HOG0007034__N19.HOG0011665__N19.HOG0007093"
## [321] "N19.HOG0003801__N19.HOG0008952"
## [322] "N19.HOG0009991__N19.HOG0016278__N19.HOG0016278__N19.HOG0015899"
## [323] "N19.HOG0002362__N19.HOG0014499__N19.HOG0012290__N19.HOG0008704__N19.HOG0008662"
## [324] "N19.HOG0003687__N19.HOG0014705__N19.HOG0012797"
## [325] "N19.HOG0016905__N19.HOG0000946__N19.HOG0011670"
## [326] "N19.HOG0015903__N19.HOG0008750__N19.HOG0003378__N19.HOG0005153__N19.HOG0007285"
## [327] "N19.HOG0016124__N19.HOG0011949__N19.HOG0008608"
## [328] "N19.HOG0017810__N19.HOG0010792"
## [329] "N19.HOG0002252__N19.HOG0013607__N19.HOG0006604__N19.HOG0016586"
## [330] "N19.HOG0015432__N19.HOG0015432"
## [331] "N19.HOG0009978__N19.HOG0013606"
## [332] "N19.HOG0002349__N19.HOG0005133__N19.HOG0007479"
## [333] "N19.HOG0012592__N19.HOG0012591__N19.HOG0014730"
## [334] "N19.HOG0014348__N19.HOG0016904"
## [335] "N19.HOG0013001__N19.HOG0008191"
## [336] "N19.HOG0000395__NA"
## [337] "N19.HOG0009010__N19.HOG0013573"
## [338] "N19.HOG0014730__N19.HOG0003168"
## [339] "N19.HOG0008934__N19.HOG0001959"
## [340] "N19.HOG0016133__N19.HOG0008443__N19.HOG0008442"
## [341] "N19.HOG0000527__N19.HOG0008017__N19.HOG0004030__N19.HOG0008441__N19.HOG0009654__N19.HOG0003568"
## [342] "N19.HOG0008964__N19.HOG0006949__N19.HOG0009167__N19.HOG0004960"
## [343] "N19.HOG0004813__N19.HOG0006813__N19.HOG0002699__N19.HOG0007651"
## [344] "N19.HOG0010713__N19.HOG0007940"
## [345] "N19.HOG0001248__N19.HOG0016903"
## [346] "N19.HOG0017805__N19.HOG0014394"
## [347] "N19.HOG0000373__N19.HOG0013596"
## [348] "N19.HOG0003721__N19.HOG0003720"
## [349] "N19.HOG0009789__N19.HOG0001393"
## [350] "N19.HOG0003595__N19.HOG0010706__N19.HOG0005293"
## [351] "N19.HOG0017802__N19.HOG0002548"
## [352] "N19.HOG0011457__N19.HOG0011457"
## [353] "N19.HOG0002475__N19.HOG0009557__N19.HOG0004652"
## [354] "N19.HOG0010227__N19.HOG0009786__N19.HOG0006466"
## [355] "N19.HOG0016276__N19.HOG0008667__N19.HOG0009593__N19.HOG0013621"
## [356] "N19.HOG0006936__N19.HOG0013585"
## [357] "N19.HOG0017800__N19.HOG0017801"
## [358] "N19.HOG0008915__N19.HOG0017799"
## [359] "N19.HOG0009791__N19.HOG0007462__N19.HOG0004796__N19.HOG0005764__NA"
## [360] "N19.HOG0015185__N19.HOG0017798__N19.HOG0015186"
## [361] "N19.HOG0007461__N19.HOG0010130__N19.HOG0012253"
## [362] "N19.HOG0013583__N19.HOG0015183"
## [363] "N19.HOG0008214__N19.HOG0008214__N19.HOG0008214__NA"
## [364] "N19.HOG0005094__N19.HOG0005094__N19.HOG0005092"
## [365] "N19.HOG0002184__N19.HOG0002185"
## [366] "N19.HOG0008941__N19.HOG0011459"
## [367] "N19.HOG0014458__N19.HOG0004316__N19.HOG0009395"
## [368] "N19.HOG0017322__N19.HOG0015233"
## [369] "N19.HOG0004689__N19.HOG0006262"
## [370] "N19.HOG0007276__N19.HOG0013004__N19.HOG0005449"
## [371] "N19.HOG0003690__N19.HOG0003689"
## [372] "NA__N19.HOG0006319"
## [373] "NA__N19.HOG0006804"
## [374] "N19.HOG0008914__N19.HOG0006599__N19.HOG0013577__N19.HOG0005079"
## [375] "NA__N19.HOG0003931"
## [376] "N19.HOG0016089__N19.HOG0006810"
## [377] "N19.HOG0015928__NA"
## [378] "N19.HOG0001953__N19.HOG0001762"
## [379] "N19.HOG0018067__N19.HOG0000773"
## [380] "N19.HOG0014413__N19.HOG0005938"
## [381] "N19.HOG0009873__N19.HOG0009873"
## [382] "N19.HOG0010247__N19.HOG0011951"
## [383] "N19.HOG0010711__N19.HOG0007813__N19.HOG0009162"
## [384] "N19.HOG0007812__N19.HOG0001572"
## [385] "N19.HOG0008010__N19.HOG0000890"
## [386] "N19.HOG0012626__N19.HOG0006708"
## [387] "N19.HOG0010220__N19.HOG0009566"
## [388] "N19.HOG0011514__N19.HOG0017906__N19.HOG0014735"
## [389] "N19.HOG0002573__N19.HOG0009796__N19.HOG0006440"
## [390] "N19.HOG0010337__N19.HOG0008688__N19.HOG0000964"
## [391] "N19.HOG0010892__N19.HOG0003932"
## [392] "N19.HOG0016098__N19.HOG0008205__N19.HOG0008436__N19.HOG0006652__N19.HOG0013032"
## [393] "N19.HOG0010754__N19.HOG0008070__N19.HOG0005120__N19.HOG0007472"
## [394] "N19.HOG0006947__N19.HOG0013608__N19.HOG0011673__N19.HOG0014409__N19.HOG0014410"
## [395] "N19.HOG0013040__N19.HOG0014443__N19.HOG0015219"
## [396] "N19.HOG0015222__N19.HOG0002175"
## [397] "N19.HOG0008937__N19.HOG0008936__N19.HOG0009390"
## [398] "N19.HOG0006951__N19.HOG0015221"
## [399] "N19.HOG0009801__N19.HOG0003128"
## [400] "N19.HOG0002195__N19.HOG0002195"
## [401] "N19.HOG0007257__N19.HOG0002966"
## [402] "N19.HOG0009375__N19.HOG0009572__N19.HOG0005465"
## [403] "N19.HOG0003976__N19.HOG0003976"
## [404] "N19.HOG0002803__N19.HOG0002096"
## [405] "N19.HOG0005919__N19.HOG0001540"
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## [407] "N19.HOG0015926__N19.HOG0008697__N19.HOG0003104"
## [408] "N19.HOG0005430__N19.HOG0007476__N19.HOG0007110"
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## [410] "N19.HOG0008349__N19.HOG0007823"
## [411] "N19.HOG0006438__N19.HOG0007822"
## [412] "NA__N19.HOG0009379"
## [413] "N19.HOG0002163__N19.HOG0002163__N19.HOG0005761"
## [414] "N19.HOG0008926__N19.HOG0009380"
## [415] "N19.HOG0005767__N19.HOG0005768__N19.HOG0009971__N19.HOG0013593__N19.HOG0007646__N19.HOG0010165"
## [416] "N19.HOG0007283__N19.HOG0014389__N19.HOG0009972"
## [417] "N19.HOG0003274__N19.HOG0015922"
## [418] "N19.HOG0012612__N19.HOG0000408__N19.HOG0016358"
## [419] "N19.HOG0014397__N19.HOG0002081__N19.HOG0014396"
## [420] "N19.HOG0009158__N19.HOG0011669"
## [421] "N19.HOG0006663__N19.HOG0002655"
## [422] "N19.HOG0003914__N19.HOG0000796"
## [423] "N19.HOG0007469__N19.HOG0007468__N19.HOG0017045"
## [424] "N19.HOG0012611__N19.HOG0012611"
## [425] "N19.HOG0006505__N19.HOG0018070"
## [426] "N19.HOG0004594__N19.HOG0013578"
## [427] "N19.HOG0011590__N19.HOG0015181__N19.HOG0011663__N19.HOG0011664"
## [428] "N19.HOG0011590__NA"
## [429] "N19.HOG0005849__N19.HOG0001275__N19.HOG0001265__N19.HOG0014440"
## [430] "N19.HOG0009169__N19.HOG0006950"
## [431] "N19.HOG0007059__N19.HOG0006326"
## [432] "N19.HOG0001160__N19.HOG0001159"
## [433] "N19.HOG0014449__N19.HOG0016105"
## [434] "N19.HOG0009652__N19.HOG0009652__N19.HOG0004582__N19.HOG0005818__N19.HOG0012277__N19.HOG0013627__N19.HOG0008698"
## [435] "N19.HOG0011259__N19.HOG0011259__N19.HOG0001583"
## [436] "N19.HOG0003452__N19.HOG0014404"
## [437] "N19.HOG0008430__N19.HOG0016998"
## [438] "N19.HOG0005470__N19.HOG0008927__N19.HOG0010334__N19.HOG0007809__N19.HOG0009000"
## [439] "N19.HOG0000098__N19.HOG0012278"
## [440] "NA__N19.HOG0005776__N19.HOG0009804__N19.HOG0013626__N19.HOG0011103__N19.HOG0011683__N19.HOG0014448"
## [441] "N19.HOG0007663__N19.HOG0010921__N19.HOG0008500__N19.HOG0009391"
## [442] "N19.HOG0011377__N19.HOG0005292"
## [443] "N19.HOG0004269__N19.HOG0004102"
## [444] "N19.HOG0008924__N19.HOG0008924__N19.HOG0003370"
## [445] "N19.HOG0008925__N19.HOG0006067"
## [446] "N19.HOG0006436__N19.HOG0009970__N19.HOG0004287"
## [447] "N19.HOG0006375__N19.HOG0001085"
## [448] "NA__N19.HOG0016818"
## [449] "N19.HOG0016817__N19.HOG0016816"
## [450] "N19.HOG0014453__N19.HOG0015425"
## [451] "N19.HOG0010015__N19.HOG0006836"
## [452] "N19.HOG0007679__N19.HOG0010003"
## [453] "N19.HOG0014354__N19.HOG0012593"
## [454] "N19.HOG0003813__N19.HOG0008342"
## [455] "N19.HOG0018072__N19.HOG0007220__N19.HOG0004696"
## [456] "N19.HOG0000532__N19.HOG0007117__N19.HOG0010720__N19.HOG0006393__N19.HOG0013062__N19.HOG0011970__N19.HOG0011971__N19.HOG0009989__N19.HOG0009990__N19.HOG0006672"
## [457] "N19.HOG0018076__N19.HOG0001643"
## [458] "N19.HOG0012600__N19.HOG0018077"
## [459] "N19.HOG0005223__N19.HOG0014417__N19.HOG0014418__N19.HOG0005773__NA"
## [460] "N19.HOG0010171__N19.HOG0013027"
## [461] "N19.HOG0011454__N19.HOG0008201"
## [462] "N19.HOG0005070__N19.HOG0016999__N19.HOG0008445__N19.HOG0018210__N19.HOG0008438__N19.HOG0007937__N19.HOG0003798"
## [463] "N19.HOG0004517__N19.HOG0018080"
## [464] "N19.HOG0010339__N19.HOG0005125__N19.HOG0016121"
## [465] "N19.HOG0001699__N19.HOG0018081__N19.HOG0012269__N19.HOG0013614"
## [466] "N19.HOG0012723__N19.HOG0008899__N19.HOG0013534__N19.HOG0006425"
## [467] "N19.HOG0014508__N19.HOG0001605"
## [468] "N19.HOG0007561__N19.HOG0005771"
## [469] "N19.HOG0008951__N19.HOG0002155"
## [470] "N19.HOG0002149__N19.HOG0004201"
## [471] "N19.HOG0000224__N19.HOG0003714__N19.HOG0017001"
## [472] "NA__NA__Oki2"
## [473] "NA__N19.HOG0004202"
## [474] "N19.HOG0000224__N19.HOG0003714__NA__N19.HOG0017001"
## [475] "N19.HOG0013071__N19.HOG0013071"
## [476] "N19.HOG0013655__N19.HOG0004785"
## [477] "N19.HOG0007290__N19.HOG0010014"
## [478] "N19.HOG0002205__N19.HOG0010231__N19.HOG0008207"
## [479] "N19.HOG0014455__N19.HOG0015231"
## [480] "N19.HOG0007477__N19.HOG0008940"
## [481] "N19.HOG0007294__N19.HOG0007295"
## [482] "N19.HOG0011458__NA"
## [483] "NA__N19.HOG0017046"
## [484] "NA__N19.HOG0010808"
## [485] "N19.HOG0011086__N19.HOG0011000"
## [486] "NA__N19.HOG0016722"
## [487] "N19.HOG0018211__NA__NA__NA__N19.HOG0012019"
## [488] "N19.HOG0018082__N19.HOG0007364"
## [489] "N19.HOG0015230__N19.HOG0003707"
## [490] "N19.HOG0008211__N19.HOG0008212"
## [491] "N19.HOG0014452__N19.HOG0007653"
## [492] "N19.HOG0016113__N19.HOG0002268"
## [493] "N19.HOG0003580__N19.HOG0013049__N19.HOG0013049"
## [494] "N19.HOG0001703__N19.HOG0002564"
## [495] "N19.HOG0014752__N19.HOG0014752"
## [496] "N19.HOG0013616__N19.HOG0009589__N19.HOG0004729"
## [497] "N19.HOG0018084__N19.HOG0002636__N19.HOG0015164"
## [498] "N19.HOG0008009__N19.HOG0005789"
## [499] "N19.HOG0007274__N19.HOG0013610"
## [500] "N19.HOG0005121__N19.HOG0007087__N19.HOG0003688"
## [501] "N19.HOG0002986__N19.HOG0003412"
## [502] "N19.HOG0005191__N19.HOG0005814__N19.HOG0004245__N19.HOG0012076__N19.HOG0003490__N19.HOG0003826__N19.HOG0014693__N19.HOG0006530__N19.HOG0013542"
## [503] "N19.HOG0008341__N19.HOG0013375__N19.HOG0006026__N19.HOG0004959"
## [504] "N19.HOG0018212__N19.HOG0012019__N19.HOG0018213__N19.HOG0017047__NA"
## [505] "N19.HOG0006821__N19.HOG0001772"
## [506] "N19.HOG0007106__N19.HOG0015919"
## [507] "N19.HOG0013037__N19.HOG0013037"
## [508] "N19.HOG0016118__N19.HOG0013036"
## [509] "N19.HOG0018086__N19.HOG0016119__N19.HOG0013816"
## [510] "N19.HOG0012271__N19.HOG0003944__N19.HOG0009591__N19.HOG0010176__N19.HOG0010221__N19.HOG0004919"
## [511] "N19.HOG0010174__N19.HOG0018087__N19.HOG0010173"
## [512] "N19.HOG0015216__N19.HOG0006071__N19.HOG0007473__N19.HOG0007818"
## [513] "N19.HOG0010712__N19.HOG0010712"
## [514] "N19.HOG0006659__N19.HOG0000525__N19.HOG0008949"
## [515] "N19.HOG0008228__N19.HOG0001851__N19.HOG0008930"
## [516] "N19.HOG0009957__N19.HOG0006057"
## [517] "N19.HOG0015168__N19.HOG0003257"
## [518] "N19.HOG0006293__N19.HOG0014426__N19.HOG0005580"
## [519] "N19.HOG0013618__NA"
## [520] "N19.HOG0001882__NA"
## [521] "N19.HOG0000140__N19.HOG0015214__N19.HOG0002741__N19.HOG0008016"
## [522] "N19.HOG0008208__N19.HOG0012631__N19.HOG0006814__N19.HOG0008695__N19.HOG0003825__N19.HOG0011954"
## [523] "N19.HOG0009168__N19.HOG0016131__N19.HOG0008935__N19.HOG0010984"
## [524] "N19.HOG0007821__N19.HOG0012273"
## [525] "N19.HOG0011680__N19.HOG0011680"
## [526] "N19.HOG0001403__N19.HOG0010957"
## [527] "N19.HOG0006025__N19.HOG0016126__N19.HOG0008687__N19.HOG0007100__N19.HOG0014687__N19.HOG0002373"
## [528] "N19.HOG0012732__N19.HOG0015448"
## [529] "N19.HOG0015555__N19.HOG0016353"
## [530] "N19.HOG0000400__N19.HOG0000399"
## [531] "N19.HOG0000244__N19.HOG0000244"
## [532] "N19.HOG0013604__N19.HOG0000622"
## [533] "NA__N19.HOG0000621"
## [534] "N19.HOG0012292__N19.HOG0015896"
## [535] "N19.HOG0003957__N19.HOG0012334__N19.HOG0006443__N19.HOG0003001__N19.HOG0011466__N19.HOG0006889"
## [536] "N19.HOG0007838__N19.HOG0010745__N19.HOG0002832"
## [537] "N19.HOG0009992__N19.HOG0010015__N19.HOG0010539__N19.HOG0014506__N19.HOG0006028"
## [538] "N19.HOG0006204__N19.HOG0005552"
## [539] "N19.HOG0007663__N19.HOG0014505__N19.HOG0008957__N19.HOG0009605__N19.HOG0009604__N19.HOG0009964"
## [540] "N19.HOG0003256__N19.HOG0014503__N19.HOG0013167"
## [541] "N19.HOG0009184__N19.HOG0011975__N19.HOG0005401"
## [542] "N19.HOG0010182__N19.HOG0016330"
## [543] "N19.HOG0013068__N19.HOG0007662"
## [544] "N19.HOG0008956__N19.HOG0009847__N19.HOG0005491"
## [545] "N19.HOG0006826__N19.HOG0000898__N19.HOG0015951"
## [546] "N19.HOG0015265__N19.HOG0001745__N19.HOG0004808"
## [547] "N19.HOG0004984__N19.HOG0005765__N19.HOG0011694__N19.HOG0008026"
## [548] "N19.HOG0008025__N19.HOG0001154"
## [549] "N19.HOG0002371__N19.HOG0014507"
## [550] "N19.HOG0001610__N19.HOG0014211"
## [551] "N19.HOG0002103__N19.HOG0013232"
## [552] "N19.HOG0000925__N19.HOG0000925__N19.HOG0012618"
## [553] "N19.HOG0005864__N19.HOG0003489"
## [554] "N19.HOG0001960__N19.HOG0005979__N19.HOG0010170__N19.HOG0007649"
## [555] "N19.HOG0003559__N19.HOG0016331__N19.HOG0015558"
## [556] "N19.HOG0018091__N19.HOG0012624"
## [557] "N19.HOG0003927__N19.HOG0010327"
## [558] "N19.HOG0009151__N19.HOG0005469__N19.HOG0004643__N19.HOG0007464"
## [559] "N19.HOG0009150__N19.HOG0005366"
## [560] "N19.HOG0009966__N19.HOG0005766"
## [561] "NA__N19.HOG0016889"
## [562] "N19.HOG0013013__N19.HOG0006092__N19.HOG0008923__N19.HOG0013218__N19.HOG0009667__N19.HOG0017004__N19.HOG0009668__N19.HOG0008922__N19.HOG0009154"
## [563] "N19.HOG0008006__N19.HOG0008204"
## [564] "N19.HOG0005514__N19.HOG0007732"
## [565] "N19.HOG0010332__N19.HOG0010331"
## [566] "N19.HOG0015433__N19.HOG0004500__N19.HOG0018094"
## [567] "N19.HOG0009583__N19.HOG0007099"
## [568] "N19.HOG0002690__N19.HOG0012609"
## [569] "N19.HOG0002710__N19.HOG0008428"
## [570] "N19.HOG0009381__NA"
## [571] "N19.HOG0002754__N19.HOG0013400"
## [572] "N19.HOG0018095__N19.HOG0008554"
## [573] "N19.HOG0008193__N19.HOG0007277"
## [574] "N19.HOG0006060__N19.HOG0006061"
## [575] "N19.HOG0013789__N19.HOG0008423"
## [576] "N19.HOG0003300__N19.HOG0011094"
## [577] "N19.HOG0003833__N19.HOG0003833"
## [578] "N19.HOG0012602__N19.HOG0010529__N19.HOG0010530"
## [579] "N19.HOG0010222__N19.HOG0003304"
## [580] "N19.HOG0007762__N19.HOG0007104"
## [581] "N19.HOG0008015__N19.HOG0008014__N19.HOG0013034__N19.HOG0001527__N19.HOG0009799__N19.HOG0012630__N19.HOG0018098"
## [582] "N19.HOG0014435__N19.HOG0007474"
## [583] "N19.HOG0005954__N19.HOG0014753"
## [584] "NA__N19.HOG0015423"
## [585] "N19.HOG0010575__N19.HOG0009166__N19.HOG0006948"
## [586] "N19.HOG0011889__N19.HOG0006100__N19.HOG0006097"
## [587] "N19.HOG0009933__N19.HOG0004303"
## [588] "N19.HOG0007954__N19.HOG0007234"
## [589] "N19.HOG0007328__N19.HOG0005885__N19.HOG0007650__N19.HOG0009800__N19.HOG0002630"
## [590] "N19.HOG0006182__N19.HOG0003691"
## [591] "N19.HOG0001020__N19.HOG0004751"
## [592] "N19.HOG0006961__N19.HOG0006824__N19.HOG0003997__N19.HOG0013650__N19.HOG0008953"
## [593] "N19.HOG0010375__N19.HOG0005603"
## [594] "N19.HOG0005065__N19.HOG0008141"
## [595] "N19.HOG0008546__N19.HOG0008492"
## [596] "N19.HOG0011451__N19.HOG0011452__N19.HOG0012615"
## [597] "N19.HOG0009586__N19.HOG0002196__N19.HOG0001179"
## [598] "N19.HOG0006325__N19.HOG0003921"
## [599] "N19.HOG0003326__N19.HOG0008504"
## [600] "N19.HOG0001185__N19.HOG0010512"
## [601] "N19.HOG0004688__N19.HOG0008674"
## [602] "N19.HOG0003287__N19.HOG0018100__N19.HOG0008917__N19.HOG0009149__N19.HOG0016059__N19.HOG0009376__N19.HOG0004087__N19.HOG0006065"
## [603] "N19.HOG0008677__N19.HOG0008676"
## [604] "N19.HOG0007804__N19.HOG0015188"
## [605] "N19.HOG0002326__N19.HOG0009386"
## [606] "N19.HOG0001475__N19.HOG0002335"
## [607] "N19.HOG0000663__N19.HOG0009079__N19.HOG0009079"
## [608] "N19.HOG0009739__N19.HOG0009079"
## [609] "N19.HOG0000970__N19.HOG0009739"
## [610] "N19.HOG0007159__N19.HOG0011102"
## [611] "N19.HOG0018101__N19.HOG0006644__N19.HOG0014605"
## [612] "N19.HOG0008422__N19.HOG0006059__N19.HOG0000634"
## [613] "N19.HOG0008001__N19.HOG0006931__N19.HOG0010509__N19.HOG0006803"
## [614] "N19.HOG0018104__N19.HOG0018103"
## [615] "NA__N19.HOG0012601__N19.HOG0006622"
## [616] "N19.HOG0007700__N19.HOG0007700"
## [617] "N19.HOG0014123__N19.HOG0013420"
## [618] "N19.HOG0000132__N19.HOG0013505__N19.HOG0014436"
## [619] "N19.HOG0000576__N19.HOG0001769"
## [620] "N19.HOG0006433__N19.HOG0008002"
## [621] "N19.HOG0007088__N19.HOG0003344"
## [622] "N19.HOG0010158__N19.HOG0004065"
## [623] "N19.HOG0009960__N19.HOG0008913__N19.HOG0005746__N19.HOG0010701__N19.HOG0010159__N19.HOG0007640__N19.HOG0011660"
## [624] "N19.HOG0012249__N19.HOG0004021__N19.HOG0006461__N19.HOG0009372__N19.HOG0007456__N19.HOG0007455__N19.HOG0008673"
## [625] "N19.HOG0011447__N19.HOG0007639"
## [626] "N19.HOG0013006__N19.HOG0013576"
## [627] "N19.HOG0010886__N19.HOG0010885"
## [628] "N19.HOG0010162__N19.HOG0010162"
## [629] "N19.HOG0012603__N19.HOG0008202"
## [630] "N19.HOG0000026__N19.HOG0014691"
## [631] "N19.HOG0000524__N19.HOG0006938"
## [632] "N19.HOG0003017__N19.HOG0000524"
## [633] "N19.HOG0008426__N19.HOG0001995"
## [634] "N19.HOG0010378__N19.HOG0001395"
## [635] "N19.HOG0010881__N19.HOG0011449"
## [636] "N19.HOG0011652__NA"
## [637] "N19.HOG0001543__N19.HOG0014363"
## [638] "N19.HOG0014364__N19.HOG0004068__N19.HOG0005953"
## [639] "N19.HOG0009961__N19.HOG0011943__N19.HOG0001750"
## [640] "N19.HOG0006934__N19.HOG0007641__N19.HOG0003777__N19.HOG0003918"
## [641] "N19.HOG0010326__N19.HOG0006547__N19.HOG0000689"
## [642] "N19.HOG0008424__N19.HOG0004917"
## [643] "N19.HOG0009374__N19.HOG0005035__N19.HOG0014366"
## [644] "N19.HOG0016726__N19.HOG0008194"
## [645] "NA__N19.HOG0012353"
## [646] "N19.HOG0011820__N19.HOG0012799__NA__N19.HOG0004945__N19.HOG0012351__N19.HOG0015379"
## [647] "N19.HOG0007921__N19.HOG0000107"
## [648] "N19.HOG0003782__N19.HOG0004266"
## [649] "N19.HOG0002991__N19.HOG0007803__N19.HOG0002640"
## [650] "N19.HOG0017794__N19.HOG0006154"
## [651] "NA__N19.HOG0008690"
## [652] "N19.HOG0013002__N19.HOG0000313"
## [653] "N19.HOG0003212__N19.HOG0004068"
## [654] "N19.HOG0005763__N19.HOG0010034__N19.HOG0003784__N19.HOG0009788"
## [655] "N19.HOG0016727__N19.HOG0002281__N19.HOG0009274"
## [656] "N19.HOG0003319__N19.HOG0012028"
## [657] "N19.HOG0013386__N19.HOG0002983"
## [658] "N19.HOG0001689__N19.HOG0015229__N19.HOG0014442__N19.HOG0004111"
## [659] "N19.HOG0009161__N19.HOG0005871"
## [660] "N19.HOG0002451__N19.HOG0002011"
## [661] "N19.HOG0009159__N19.HOG0011161"
## [662] "N19.HOG0001719__N19.HOG0008429__N19.HOG0002507"
## [663] "N19.HOG0013620__N19.HOG0007107__N19.HOG0009592"
## [664] "N19.HOG0002257__N19.HOG0006665"
## [665] "N19.HOG0000533__N19.HOG0000533__N19.HOG0006728__N19.HOG0011656"
## [666] "N19.HOG0001301__N19.HOG0003738"
## [667] "NA__N19.HOG0011242"
## [668] "N19.HOG0018216__N19.HOG0014496"
## [669] "N19.HOG0014407__N19.HOG0004436"
## [670] "N19.HOG0007112__N19.HOG0005573__N19.HOG0000526"
## [671] "N19.HOG0017329__N19.HOG0014494"
## [672] "N19.HOG0015228__N19.HOG0015929__N19.HOG0005910"
## [673] "N19.HOG0014665__N19.HOG0002143"
## [674] "N19.HOG0010455__N19.HOG0015400__N19.HOG0008013__N19.HOG0009798"
## [675] "N19.HOG0009981__N19.HOG0006811"
## [676] "N19.HOG0014741__N19.HOG0014741"
## [677] "N19.HOG0001792__N19.HOG0002254"
## [678] "N19.HOG0004567__N19.HOG0001718__N19.HOG0011950"
## [679] "N19.HOG0013820__N19.HOG0011931"
## [680] "N19.HOG0000508__N19.HOG0013820"
## [681] "N19.HOG0010780__N19.HOG0010780"
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## [683] "N19.HOG0014848__N19.HOG0013581__N19.HOG0017788"
## [684] "N19.HOG0015261__N19.HOG0007837"
## [685] "NA__NA__Oki3"
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## [698] "N19.HOG0001824__N19.HOG0001832__N19.HOG0001831"
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## [702] "N19.HOG0005995__N19.HOG0005777__N19.HOG0005777__N19.HOG0005777"
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## [714] "N19.HOG0011850__N19.HOG0011850"
## [715] "N19.HOG0002485__N19.HOG0005186"
## [716] "NA__N19.HOG0014083"
## [717] "N19.HOG0004956__N19.HOG0010779__N19.HOG0008134"
## [718] "N19.HOG0017563__N19.HOG0017561"
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## [722] "N19.HOG0007027__N19.HOG0005012__N19.HOG0006269__N19.HOG0011586"
## [723] "NA__N19.HOG0012434"
## [724] "N19.HOG0015687__N19.HOG0016819"
## [725] "N19.HOG0011576__N19.HOG0011577__N19.HOG0016466"
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## [736] "N19.HOG0011737__N19.HOG0017627"
## [737] "N19.HOG0014974__N19.HOG0015826"
## [738] "NA__N19.HOG0015730"
## [739] "N19.HOG0012857__N19.HOG0016141"
## [740] "N19.HOG0012473__N19.HOG0004450"
## [741] "N19.HOG0004573__N19.HOG0012469"
## [742] "N19.HOG0014475__N19.HOG0002419"
## [743] "N19.HOG0002726__N19.HOG0011018__N19.HOG0004469"
## [744] "N19.HOG0015695__N19.HOG0003556"
## [745] "N19.HOG0014732__N19.HOG0001442"
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## [748] "N19.HOG0016461__N19.HOG0003038"
## [749] "N19.HOG0012840__N19.HOG0003007"
## [750] "NA__N19.HOG0001825"
## [751] "N19.HOG0014764__N19.HOG0003229__N19.HOG0013405"
## [752] "N19.HOG0016160__N19.HOG0014076"
## [753] "N19.HOG0012159__N19.HOG0012159"
## [754] "N19.HOG0010460__N19.HOG0002856"
## [755] "NA__N19.HOG0012126__N19.HOG0014927__N19.HOG0013367"
## [756] "N19.HOG0011775__N19.HOG0014734"
## [757] "N19.HOG0012294__N19.HOG0008552"
## [758] "N19.HOG0017677__N19.HOG0004045"
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## [760] "N19.HOG0004164__N19.HOG0004438"
## [761] "N19.HOG0000439__N19.HOG0012783__N19.HOG0010054"
## [762] "NA__N19.HOG0012243"
## [763] "N19.HOG0004517__N19.HOG0003509__N19.HOG0003509__N19.HOG0003513"
## [764] "N19.HOG0012864__N19.HOG0008350__N19.HOG0009524"
## [765] "N19.HOG0007563__N19.HOG0014918"
## [766] "N19.HOG0017692__N19.HOG0010448"
## [767] "N19.HOG0013444__N19.HOG0015722__N19.HOG0003987"
## [768] "N19.HOG0007744__N19.HOG0007562__N19.HOG0008598"
## [769] "N19.HOG0009656__N19.HOG0009297__N19.HOG0009295"
## [770] "N19.HOG0013400__N19.HOG0014925"
## [771] "N19.HOG0009032__N19.HOG0001815__N19.HOG0006158__N19.HOG0006158"
## [772] "N19.HOG0014900__N19.HOG0009096"
## [773] "N19.HOG0001207__N19.HOG0004399__N19.HOG0016872__N19.HOG0016872"
## [774] "N19.HOG0006493__N19.HOG0006493"
## [775] "N19.HOG0007580__N19.HOG0000641"
## [776] "N19.HOG0016811__N19.HOG0005088__N19.HOG0012160__N19.HOG0013393"
## [777] "N19.HOG0010628__N19.HOG0007391__N19.HOG0014912__N19.HOG0009298"
## [778] "N19.HOG0013970__N19.HOG0013306"
## [779] "N19.HOG0011028__N19.HOG0011581"
## [780] "N19.HOG0006731__N19.HOG0014096"
## [781] "N19.HOG0011355__N19.HOG0006892"
## [782] "N19.HOG0006401__N19.HOG0014957__N19.HOG0000099"
## [783] "N19.HOG0015692__N19.HOG0010079"
## [784] "N19.HOG0010781__N19.HOG0001613__N19.HOG0002072"
## [785] "N19.HOG0010616__N19.HOG0012597__N19.HOG0012157"
## [786] "N19.HOG0012576__N19.HOG0017011__N19.HOG0008581__N19.HOG0013338"
## [787] "N19.HOG0003300__N19.HOG0017751"
## [788] "N19.HOG0012153__N19.HOG0012457"
## [789] "N19.HOG0004478__N19.HOG0015721__N19.HOG0004439"
## [790] "N19.HOG0010678__N19.HOG0017760"
## [791] "N19.HOG0007560__N19.HOG0007560"
## [792] "N19.HOG0012148__N19.HOG0001743"
## [793] "N19.HOG0004308__N19.HOG0013857"
## [794] "N19.HOG0014089__N19.HOG0016138__N19.HOG0017768"
## [795] "N19.HOG0011012__N19.HOG0011011"
## [796] "N19.HOG0002843__N19.HOG0008847__N19.HOG0007016"
## [797] "N19.HOG0012867__N19.HOG0012867"
## [798] "N19.HOG0007565__N19.HOG0003735"
## [799] "N19.HOG0010456__N19.HOG0010457__N19.HOG0012855"
## [800] "N19.HOG0000606__N19.HOG0006161"
## [801] "N19.HOG0002724__N19.HOG0000706"
## [802] "N19.HOG0001218__N19.HOG0009731"
## [803] "N19.HOG0011847__N19.HOG0016735__N19.HOG0017784"
## [804] "N19.HOG0016741__N19.HOG0000583"
## [805] "N19.HOG0011851__N19.HOG0011852"
## [806] "N19.HOG0013879__N19.HOG0012854"
## [807] "N19.HOG0006394__N19.HOG0003978"
## [808] "N19.HOG0008365__N19.HOG0006760"
## [809] "N19.HOG0012497__N19.HOG0010472"
## [810] "N19.HOG0008136__N19.HOG0016275"
## [811] "N19.HOG0009299__N19.HOG0000233"
## [812] "N19.HOG0014974__N19.HOG0014040"
## [813] "N19.HOG0012961__N19.HOG0016536"
## [814] "N19.HOG0001147__N19.HOG0003456"
## [815] "N19.HOG0008332__N19.HOG0016277__N19.HOG0016277"
## [816] "N19.HOG0014699__N19.HOG0002650__N19.HOG0005196"
## [817] "N19.HOG0013370__N19.HOG0016279"
## [818] "N19.HOG0014698__NA"
## [819] "N19.HOG0015010__N19.HOG0006896"
## [820] "N19.HOG0006033__N19.HOG0015009__N19.HOG0010781"
## [821] "N19.HOG0007748__N19.HOG0001149"
## [822] "N19.HOG0017828__N19.HOG0008863__N19.HOG0006895__N19.HOG0014148"
## [823] "N19.HOG0011585__N19.HOG0011585"
## [824] "N19.HOG0009293__N19.HOG0009293"
## [825] "N19.HOG0015111__N19.HOG0016730"
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## [828] "N19.HOG0002550__N19.HOG0014494__N19.HOG0003607"
## [829] "N19.HOG0016915__N19.HOG0004288"
## [830] "N19.HOG0009509__N19.HOG0007702__N19.HOG0003887"
## [831] "N19.HOG0011798__N19.HOG0014905"
## [832] "N19.HOG0008346__N19.HOG0008347"
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## [834] "N19.HOG0011162__N19.HOG0010238"
## [835] "N19.HOG0002652__N19.HOG0003810"
## [836] "N19.HOG0002013__N19.HOG0002013"
## [837] "N19.HOG0012401__N19.HOG0002622"
## [838] "N19.HOG0004660__N19.HOG0005042"
## [839] "N19.HOG0004481__N19.HOG0003184"
## [840] "N19.HOG0003597__N19.HOG0017050"
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## [848] "N19.HOG0017842__N19.HOG0004212"
## [849] "N19.HOG0011384__N19.HOG0011384__N19.HOG0004522"
## [850] "N19.HOG0016154__N19.HOG0013397"
## [851] "NA__N19.HOG0015691"
## [852] "N19.HOG0016162__N19.HOG0017843__N19.HOG0015690__N19.HOG0007028__N19.HOG0014080"
## [853] "N19.HOG0012836__N19.HOG0016247"
## [854] "N19.HOG0007715__N19.HOG0009501"
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## [857] "N19.HOG0011910__N19.HOG0010952"
## [858] "N19.HOG0008339__N19.HOG0015952"
## [859] "N19.HOG0006391__N19.HOG0005917"
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## [862] "N19.HOG0009452__N19.HOG0001687__N19.HOG0013385"
## [863] "N19.HOG0017696__N19.HOG0013804"
## [864] "NA__N19.HOG0015510"
## [865] "N19.HOG0015511__N19.HOG0016050"
## [866] "N19.HOG0017698__N19.HOG0016866"
## [867] "NA__N19.HOG0003682"
## [868] "N19.HOG0005380__N19.HOG0005380"
## [869] "N19.HOG0001880__N19.HOG0002359"
## [870] "N19.HOG0001981__N19.HOG0012868__N19.HOG0000778"
## [871] "N19.HOG0003418__N19.HOG0003420"
## [872] "N19.HOG0003723__N19.HOG0001484"
## [873] "N19.HOG0009309__N19.HOG0010106"
## [874] "N19.HOG0002969__N19.HOG0014937"
## [875] "N19.HOG0014953__N19.HOG0009742__NA__N19.HOG0010100"
## [876] "N19.HOG0010641__N19.HOG0004480__N19.HOG0002432__N19.HOG0017470__N19.HOG0008352"
## [877] "N19.HOG0011396__N19.HOG0016917"
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## [887] "N19.HOG0010923__N19.HOG0007213"
## [888] "N19.HOG0014108__N19.HOG0011182__N19.HOG0011181"
## [889] "N19.HOG0000315__N19.HOG0002768__N19.HOG0014859"
## [890] "N19.HOG0000583__N19.HOG0000583"
## [891] "N19.HOG0012825__N19.HOG0013776"
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## [893] "N19.HOG0008147__N19.HOG0010990"
## [894] "N19.HOG0007749__N19.HOG0015734__N19.HOG0003799__N19.HOG0003799__NA__N19.HOG0012464"
## [895] "N19.HOG0003025__N19.HOG0016468"
## [896] "N19.HOG0017850__N19.HOG0001365__N19.HOG0011161"
## [897] "N19.HOG0018219__N19.HOG0018219__N19.HOG0003462__N19.HOG0017851"
## [898] "N19.HOG0001780__N19.HOG0000891__N19.HOG0013395"
## [899] "N19.HOG0011038__N19.HOG0011038__N19.HOG0015726"
## [900] "N19.HOG0007333__N19.HOG0003989__N19.HOG0007031"
## [901] "N19.HOG0009557__N19.HOG0001046"
## [902] "N19.HOG0012832__N19.HOG0012832__N19.HOG0001144"
## [903] "N19.HOG0016715__NA"
## [904] "N19.HOG0014103__N19.HOG0003902"
## [905] "N19.HOG0009496__N19.HOG0011572"
## [906] "N19.HOG0009917__N19.HOG0009464"
## [907] "N19.HOG0011381__N19.HOG0011381"
## [908] "N19.HOG0010845__N19.HOG0010846"
## [909] "N19.HOG0017855__N19.HOG0012125__N19.HOG0012125"
## [910] "N19.HOG0010825__N19.HOG0015525"
## [911] "N19.HOG0008780__NA"
## [912] "N19.HOG0008783__N19.HOG0016428"
## [913] "N19.HOG0009918__N19.HOG0006398"
## [914] "N19.HOG0002610__N19.HOG0004054"
## [915] "N19.HOG0005901__N19.HOG0012719__N19.HOG0000910"
## [916] "N19.HOG0003979__N19.HOG0013390"
## [917] "N19.HOG0011597__NA"
## [918] "N19.HOG0013379__N19.HOG0016267"
## [919] "N19.HOG0013379__N19.HOG0016267"
## [920] "N19.HOG0001972__N19.HOG0009332__N19.HOG0009331"
## [921] "N19.HOG0010084__N19.HOG0015702__N19.HOG0014075"
## [922] "N19.HOG0000441__N19.HOG0004177"
## [923] "N19.HOG0010851__N19.HOG0017052__NA__N19.HOG0017052__N19.HOG0013806"
## [924] "NA__N19.HOG0013820"
## [925] "NA__N19.HOG0015728"
## [926] "N19.HOG0010813__N19.HOG0014961__N19.HOG0012860"
## [927] "N19.HOG0009770__N19.HOG0009770__N19.HOG0015108__N19.HOG0008348__N19.HOG0016129__N19.HOG0015109__N19.HOG0013230"
## [928] "N19.HOG0009214__N19.HOG0005923__N19.HOG0005922__N19.HOG0002367"
## [929] "N19.HOG0002050__N19.HOG0012061"
## [930] "N19.HOG0001014__N19.HOG0001014"
## [931] "N19.HOG0000588__N19.HOG0006265"
## [932] "N19.HOG0002332__N19.HOG0012944"
## [933] "N19.HOG0007223__N19.HOG0007222"
## [934] "N19.HOG0011396__N19.HOG0011397"
## [935] "N19.HOG0013401__N19.HOG0000288"
## [936] "N19.HOG0009508__N19.HOG0014079"
## [937] "N19.HOG0013352__N19.HOG0013352__N19.HOG0014909"
## [938] "N19.HOG0000586__N19.HOG0000586"
## [939] "N19.HOG0011031__N19.HOG0014947"
## [940] "N19.HOG0012731__N19.HOG0017859"
## [941] "N19.HOG0014921__N19.HOG0012839"
## [942] "N19.HOG0016921__N19.HOG0016921__N19.HOG0006159__N19.HOG0015011"
## [943] "N19.HOG0012343__N19.HOG0002837"
## [944] "N19.HOG0004910__N19.HOG0017480__N19.HOG0012134"
## [945] "N19.HOG0014120__N19.HOG0012498"
## [946] "N19.HOG0015651__N19.HOG0015126"
## [947] "N19.HOG0008444__N19.HOG0007321"
## [948] "N19.HOG0010446__N19.HOG0012162"
## [949] "N19.HOG0016923__N19.HOG0015029"
## [950] "N19.HOG0012689__N19.HOG0004243__N19.HOG0015337"
## [951] "N19.HOG0000941__NA"
## [952] "N19.HOG0017867__N19.HOG0011568"
## [953] "N19.HOG0004615__N19.HOG0003269"
## [954] "N19.HOG0013380__N19.HOG0014064"
## [955] "N19.HOG0014695__N19.HOG0014944"
## [956] "N19.HOG0009006__N19.HOG0017863"
## [957] "N19.HOG0010693__N19.HOG0004767"
## [958] "N19.HOG0006496__N19.HOG0001252"
## [959] "N19.HOG0004141__N19.HOG0004143"
## [960] "N19.HOG0016968__N19.HOG0013169__N19.HOG0017976"
## [961] "N19.HOG0017861__N19.HOG0018220__N19.HOG0014697"
## [962] "N19.HOG0012129__N19.HOG0012128__N19.HOG0014055__N19.HOG0002602"
## [963] "N19.HOG0011037__N19.HOG0011037__N19.HOG0011037"
## [964] "N19.HOG0011761__N19.HOG0015014"
## [965] "N19.HOG0013356__N19.HOG0014919"
## [966] "N19.HOG0011575__N19.HOG0011574"
## [967] "N19.HOG0010161__N19.HOG0010161__N19.HOG0010161"
## [968] "N19.HOG0002896__N19.HOG0012851"
## [969] "N19.HOG0014338__N19.HOG0013565"
## [970] "N19.HOG0016287__N19.HOG0002011"
## [971] "N19.HOG0006469__N19.HOG0003024"
## [972] "N19.HOG0001975__N19.HOG0008607"
## [973] "N19.HOG0011859__N19.HOG0011859"
## [974] "N19.HOG0004727__N19.HOG0010826__N19.HOG0014938"
## [975] "NA__N19.HOG0011730__N19.HOG0005441"
## [976] "N19.HOG0003335__N19.HOG0003330__N19.HOG0003331"
## [977] "N19.HOG0017872__N19.HOG0017873__N19.HOG0017874"
## [978] "NA__N19.HOG0017875"
## [979] "N19.HOG0014786__N19.HOG0010047__N19.HOG0013751__N19.HOG0007866__N19.HOG0010788__N19.HOG0006227__N19.HOG0009680__N19.HOG0010773"
## [980] "N19.HOG0010046__N19.HOG0008534"
## [981] "N19.HOG0009257__N19.HOG0016290"
## [982] "N19.HOG0012363__N19.HOG0016888__N19.HOG0014722"
## [983] "N19.HOG0012397__N19.HOG0012397__N19.HOG0009043__N19.HOG0010800__N19.HOG0010800"
## [984] "N19.HOG0005695__N19.HOG0004012__N19.HOG0007361__N19.HOG0003342__N19.HOG0010232__N19.HOG0013921__N19.HOG0007009__N19.HOG0007009"
## [985] "N19.HOG0005809__N19.HOG0005808__N19.HOG0008838"
## [986] "N19.HOG0006150__N19.HOG0006149__N19.HOG0006148__N19.HOG0008591__N19.HOG0007739"
## [987] "N19.HOG0009492__N19.HOG0016176__N19.HOG0007927__N19.HOG0007384__N19.HOG0009451"
## [988] "N19.HOG0002875__N19.HOG0016924"
## [989] "N19.HOG0011367__N19.HOG0002781__N19.HOG0015679"
## [990] "N19.HOG0004669__N19.HOG0001933"
## [991] "N19.HOG0015678__N19.HOG0016926"
## [992] "N19.HOG0013340__N19.HOG0011745"
## [993] "N19.HOG0002738__N19.HOG0006307__N19.HOG0006616__N19.HOG0006616"
## [994] "N19.HOG0016927__N19.HOG0009493"
## [995] "N19.HOG0009291__N19.HOG0010422"
## [996] "N19.HOG0014028__N19.HOG0012122__NA"
## [997] "N19.HOG0005516__N19.HOG0003604"
## [998] "N19.HOG0007171__N19.HOG0018223__N19.HOG0011175"
## [999] "N19.HOG0003471__N19.HOG0015537__N19.HOG0017043"
## [1000] "NA__N19.HOG0006305"
## [1001] "N19.HOG0010387__N19.HOG0006006__N19.HOG0013291__N19.HOG0012798"
## [1002] "N19.HOG0005800__N19.HOG0005176__N19.HOG0004432__N19.HOG0004433__N19.HOG0004386"
## [1003] "N19.HOG0006841__N19.HOG0007727__N19.HOG0008561"
## [1004] "N19.HOG0013290__N19.HOG0004375__N19.HOG0002628__N19.HOG0015637"
## [1005] "N19.HOG0017880__N19.HOG0013289"
## [1006] "N19.HOG0005142__N19.HOG0003743__N19.HOG0001476__N19.HOG0000710"
## [1007] "N19.HOG0008314__N19.HOG0006852__N19.HOG0003139__N19.HOG0007208__N19.HOG0015460"
## [1008] "N19.HOG0010444__N19.HOG0010444"
## [1009] "N19.HOG0013326__N19.HOG0013541"
## [1010] "N19.HOG0002087__N19.HOG0002178__N19.HOG0009910__N19.HOG0017881__N19.HOG0003278__N19.HOG0004131__N19.HOG0010818"
## [1011] "N19.HOG0010517__N19.HOG0010071"
## [1012] "N19.HOG0010517__N19.HOG0010517"
## [1013] "N19.HOG0012346__N19.HOG0006176"
## [1014] "N19.HOG0007380__N19.HOG0007380__N19.HOG0013332"
## [1015] "N19.HOG0005518__N19.HOG0010248"
## [1016] "N19.HOG0013781__N19.HOG0013781"
## [1017] "N19.HOG0008569__N19.HOG0017882"
## [1018] "N19.HOG0011762__N19.HOG0011762"
## [1019] "N19.HOG0008111__N19.HOG0007542"
## [1020] "N19.HOG0006484__N19.HOG0009893"
## [1021] "N19.HOG0001079__N19.HOG0010940__N19.HOG0008312"
## [1022] "N19.HOG0004998__N19.HOG0006607__N19.HOG0010061"
## [1023] "N19.HOG0006873__N19.HOG0008313"
## [1024] "N19.HOG0008560__N19.HOG0001266__N19.HOG0004037__N19.HOG0009475__N19.HOG0005389"
## [1025] "N19.HOG0014845__N19.HOG0006722__N19.HOG0009063__N19.HOG0009063__N19.HOG0006485__N19.HOG0010604__N19.HOG0014844"
## [1026] "N19.HOG0006880__N19.HOG0012420__N19.HOG0000536__N19.HOG0003293"
## [1027] "N19.HOG0009486__N19.HOG0013981"
## [1028] "N19.HOG0003111__N19.HOG0010272"
## [1029] "N19.HOG0009725__N19.HOG0009450__N19.HOG0010937__N19.HOG0002833__N19.HOG0012493__N19.HOG0006032"
## [1030] "N19.HOG0010812__N19.HOG0013309"
## [1031] "N19.HOG0010812__NA"
## [1032] "N19.HOG0012100__N19.HOG0016750"
## [1033] "N19.HOG0003505__N19.HOG0004849"
## [1034] "N19.HOG0011834__N19.HOG0011833"
## [1035] "NA__N19.HOG0014811__N19.HOG0009888__N19.HOG0013906__N19.HOG0017885__N19.HOG0017884"
## [1036] "NA__N19.HOG0015617"
## [1037] "N19.HOG0015876__N19.HOG0015527"
## [1038] "N19.HOG0013074__N19.HOG0008189__N19.HOG0006308__N19.HOG0013567"
## [1039] "N19.HOG0000196__N19.HOG0017886__N19.HOG0005907__N19.HOG0017887__N19.HOG0017888"
## [1040] "N19.HOG0016170__N19.HOG0003224"
## [1041] "N19.HOG0007911__N19.HOG0013294__N19.HOG0008318"
## [1042] "NA__N19.HOG0005902"
## [1043] "N19.HOG0008563__N19.HOG0007544__N19.HOG0010036__N19.HOG0008112__N19.HOG0002340"
## [1044] "N19.HOG0010271__N19.HOG0010271"
## [1045] "N19.HOG0008321__N19.HOG0008322"
## [1046] "N19.HOG0009722__N19.HOG0010606__N19.HOG0010607__N19.HOG0009899"
## [1047] "N19.HOG0010389__N19.HOG0010935"
## [1048] "N19.HOG0002812__N19.HOG0007372__N19.HOG0012418"
## [1049] "N19.HOG0013743__N19.HOG0003429"
## [1050] "N19.HOG0000267__N19.HOG0004750__N19.HOG0010931__N19.HOG0003138"
## [1051] "N19.HOG0015529__N19.HOG0017007__N19.HOG0001983__NA__N19.HOG0017892"
## [1052] "N19.HOG0014866__N19.HOG0006736"
## [1053] "N19.HOG0009482__N19.HOG0009484__N19.HOG0003816"
## [1054] "N19.HOG0017893__N19.HOG0009485__N19.HOG0010517"
## [1055] "N19.HOG0009724__N19.HOG0010815__N19.HOG0008572__N19.HOG0009840"
## [1056] "N19.HOG0011820__NA"
## [1057] "N19.HOG0015548__NA"
## [1058] "N19.HOG0001904__N19.HOG0007543"
## [1059] "N19.HOG0008799__N19.HOG0010807"
## [1060] "N19.HOG0013955__N19.HOG0008317__N19.HOG0003166"
## [1061] "N19.HOG0005802__N19.HOG0004083"
## [1062] "N19.HOG0004952__N19.HOG0013292"
## [1063] "N19.HOG0007188__N19.HOG0003065__N19.HOG0009708__N19.HOG0009707__N19.HOG0004244"
## [1064] "N19.HOG0003477__N19.HOG0008801__N19.HOG0005001"
## [1065] "N19.HOG0013293__N19.HOG0008800__N19.HOG0014649__N19.HOG0002702"
## [1066] "N19.HOG0010062__N19.HOG0008562__N19.HOG0007910__N19.HOG0007909__N19.HOG0007024__N19.HOG0013412"
## [1067] "N19.HOG0003300__N19.HOG0010832"
## [1068] "N19.HOG0005174__N19.HOG0005173"
## [1069] "N19.HOG0016292__N19.HOG0000812__N19.HOG0006870__N19.HOG0010060__N19.HOG0005251__N19.HOG0013285"
## [1070] "N19.HOG0008796__N19.HOG0005706__N19.HOG0005708__N19.HOG0005707"
## [1071] "NA__N19.HOG0009270"
## [1072] "N19.HOG0007726__N19.HOG0011536__N19.HOG0011536"
## [1073] "N19.HOG0016293__N19.HOG0003659__N19.HOG0001439__N19.HOG0011589"
## [1074] "N19.HOG0008309__N19.HOG0012588"
## [1075] "N19.HOG0008795__N19.HOG0011185__N19.HOG0011186"
## [1076] "N19.HOG0007567__N19.HOG0007611__N19.HOG0006753__N19.HOG0009102"
## [1077] "N19.HOG0000385__N19.HOG0008149"
## [1078] "N19.HOG0008851__N19.HOG0007568__N19.HOG0000987"
## [1079] "N19.HOG0000986__N19.HOG0012870__N19.HOG0002315__N19.HOG0013952__N19.HOG0010433"
## [1080] "N19.HOG0004072__N19.HOG0016167"
## [1081] "N19.HOG0011554__N19.HOG0006249"
## [1082] "N19.HOG0017897__N19.HOG0014887"
## [1083] "N19.HOG0003176__N19.HOG0008586__N19.HOG0010402__N19.HOG0007347__N19.HOG0013335__N19.HOG0007272"
## [1084] "N19.HOG0003660__N19.HOG0005911"
## [1085] "N19.HOG0003130__N19.HOG0003554"
## [1086] "N19.HOG0009095__N19.HOG0001029__N19.HOG0005102__N19.HOG0012118"
## [1087] "N19.HOG0006255__N19.HOG0004814__N19.HOG0004814__N19.HOG0006141"
## [1088] "N19.HOG0004887__N19.HOG0011636__N19.HOG0006740__N19.HOG0004579__N19.HOG0000451__N19.HOG0009394"
## [1089] "N19.HOG0014870__N19.HOG0010343__N19.HOG0006441"
## [1090] "N19.HOG0003481__N19.HOG0007181"
## [1091] "N19.HOG0013915__N19.HOG0015621"
## [1092] "N19.HOG0002059__N19.HOG0008797__N19.HOG0010223__N19.HOG0008110"
## [1093] "N19.HOG0004869__N19.HOG0004869"
## [1094] "N19.HOG0007534__N19.HOG0010434"
## [1095] "N19.HOG0012726__N19.HOG0000469"
## [1096] "N19.HOG0008103__N19.HOG0003211__NA__N19.HOG0007362"
## [1097] "N19.HOG0016183__N19.HOG0013266"
## [1098] "N19.HOG0002775__N19.HOG0002776"
## [1099] "N19.HOG0016288__N19.HOG0011808"
## [1100] "N19.HOG0016289__N19.HOG0017000"
## [1101] "N19.HOG0005701__N19.HOG0013923"
## [1102] "N19.HOG0013782__N19.HOG0017898__N19.HOG0015624"
## [1103] "N19.HOG0005504__N19.HOG0005504"
## [1104] "N19.HOG0008100__N19.HOG0014822__N19.HOG0007904__N19.HOG0008101__N19.HOG0008102__NA"
## [1105] "N19.HOG0012787__N19.HOG0003947__N19.HOG0006575__N19.HOG0010059__N19.HOG0007180"
## [1106] "N19.HOG0005586__N19.HOG0015471__N19.HOG0008819__N19.HOG0007870"
## [1107] "N19.HOG0008573__NA"
## [1108] "N19.HOG0005409__N19.HOG0007554"
## [1109] "N19.HOG0006863__N19.HOG0008822__N19.HOG0013318__N19.HOG0005407"
## [1110] "N19.HOG0002177__N19.HOG0002179"
## [1111] "N19.HOG0002176__N19.HOG0002179"
## [1112] "N19.HOG0011375__N19.HOG0011374"
## [1113] "N19.HOG0000161__N19.HOG0000158"
## [1114] "N19.HOG0005259__N19.HOG0000250"
## [1115] "N19.HOG0010781__N19.HOG0001517__N19.HOG0011293"
## [1116] "N19.HOG0014112__N19.HOG0007753__N19.HOG0007511__N19.HOG0007569__N19.HOG0004364"
## [1117] "N19.HOG0009513__N19.HOG0007941"
## [1118] "N19.HOG0006403__N19.HOG0006403"
## [1119] "N19.HOG0009747__N19.HOG0009311__N19.HOG0005425"
## [1120] "N19.HOG0005898__N19.HOG0002951"
## [1121] "N19.HOG0002672__N19.HOG0009075"
## [1122] "N19.HOG0011812__N19.HOG0011812"
## [1123] "N19.HOG0007633__N19.HOG0002100"
## [1124] "N19.HOG0004721__N19.HOG0004722__NA"
## [1125] "N19.HOG0006427__N19.HOG0017053"
## [1126] "N19.HOG0006426__N19.HOG0009780"
## [1127] "N19.HOG0012871__N19.HOG0013799"
## [1128] "N19.HOG0003191__N19.HOG0016295"
## [1129] "N19.HOG0001969__N19.HOG0001969"
## [1130] "N19.HOG0013297__N19.HOG0016419__N19.HOG0013950"
## [1131] "N19.HOG0004606__N19.HOG0016414__NA__N19.HOG0007709__N19.HOG0013947"
## [1132] "N19.HOG0011180__N19.HOG0004041"
## [1133] "N19.HOG0014827__N19.HOG0005384"
## [1134] "N19.HOG0009056__N19.HOG0004010__N19.HOG0010430__N19.HOG0001884"
## [1135] "N19.HOG0010980__N19.HOG0010981__N19.HOG0013264"
## [1136] "N19.HOG0002625__N19.HOG0002626"
## [1137] "N19.HOG0011178__N19.HOG0011179"
## [1138] "N19.HOG0009049__N19.HOG0006597"
## [1139] "N19.HOG0008106__N19.HOG0009259__N19.HOG0007719"
## [1140] "N19.HOG0013927__N19.HOG0006598__N19.HOG0010602"
## [1141] "N19.HOG0003286__N19.HOG0006238"
## [1142] "NA__N19.HOG0000486__N19.HOG0000486"
## [1143] "N19.HOG0005799__N19.HOG0002121"
## [1144] "N19.HOG0002131__N19.HOG0001328__NA__N19.HOG0002001"
## [1145] "N19.HOG0013299__N19.HOG0013299__N19.HOG0013810__N19.HOG0013810__N19.HOG0000846"
## [1146] "N19.HOG0007913__N19.HOG0008758__N19.HOG0007914__N19.HOG0010435"
## [1147] "N19.HOG0013298__N19.HOG0005903"
## [1148] "N19.HOG0013779__N19.HOG0008114__N19.HOG0008114__N19.HOG0008804__N19.HOG0004807__N19.HOG0004965__N19.HOG0002358__N19.HOG0009713"
## [1149] "N19.HOG0001531__N19.HOG0004560"
## [1150] "N19.HOG0011544__N19.HOG0011544"
## [1151] "N19.HOG0011545__N19.HOG0011545__N19.HOG0018227"
## [1152] "N19.HOG0013959__N19.HOG0000259"
## [1153] "N19.HOG0004809__N19.HOG0014853"
## [1154] "N19.HOG0005166__N19.HOG0005318__N19.HOG0006875__N19.HOG0006129"
## [1155] "N19.HOG0010388__N19.HOG0007199"
## [1156] "N19.HOG0009477__N19.HOG0008815"
## [1157] "N19.HOG0009897__N19.HOG0003814__N19.HOG0017907"
## [1158] "N19.HOG0013798__N19.HOG0008568"
## [1159] "N19.HOG0004032__N19.HOG0001012__N19.HOG0004849"
## [1160] "N19.HOG0009902__N19.HOG0006737"
## [1161] "N19.HOG0004925__N19.HOG0009276__N19.HOG0006879"
## [1162] "N19.HOG0007373__N19.HOG0003739"
## [1163] "N19.HOG0011352__N19.HOG0008818"
## [1164] "N19.HOG0012407__N19.HOG0012811"
## [1165] "N19.HOG0011650__N19.HOG0004229"
## [1166] "N19.HOG0011762__N19.HOG0011762"
## [1167] "N19.HOG0009955__N19.HOG0008905"
## [1168] "N19.HOG0011089__N19.HOG0006928__N19.HOG0003124__N19.HOG0001807__N19.HOG0001105"
## [1169] "N19.HOG0009062__N19.HOG0008107__N19.HOG0009268__N19.HOG0008794"
## [1170] "N19.HOG0013946__N19.HOG0005386"
## [1171] "N19.HOG0004670__N19.HOG0015631"
## [1172] "N19.HOG0016756__N19.HOG0013944"
## [1173] "N19.HOG0001734__N19.HOG0000139"
## [1174] "N19.HOG0005379__N19.HOG0017912"
## [1175] "NA__N19.HOG0001314"
## [1176] "N19.HOG0014113__N19.HOG0003363"
## [1177] "N19.HOG0017914__N19.HOG0011311__N19.HOG0009898__N19.HOG0014463__N19.HOG0008118__N19.HOG0012414"
## [1178] "N19.HOG0009480__N19.HOG0006137__N19.HOG0005607__N19.HOG0005608"
## [1179] "N19.HOG0016178__N19.HOG0004176"
## [1180] "N19.HOG0013323__N19.HOG0005711__N19.HOG0011192__N19.HOG0006145__N19.HOG0004247__N19.HOG0009906"
## [1181] "N19.HOG0003458__N19.HOG0000038__N19.HOG0012816__N19.HOG0001781__N19.HOG0008825"
## [1182] "N19.HOG0013990__N19.HOG0013409"
## [1183] "N19.HOG0011359__N19.HOG0011360"
## [1184] "N19.HOG0014964__N19.HOG0002249"
## [1185] "N19.HOG0010109__N19.HOG0000830"
## [1186] "N19.HOG0014963__N19.HOG0010108"
## [1187] "N19.HOG0001214__N19.HOG0001214"
## [1188] "N19.HOG0009101__N19.HOG0009855"
## [1189] "N19.HOG0008353__N19.HOG0009441"
## [1190] "N19.HOG0010432__N19.HOG0010431"
## [1191] "N19.HOG0004167__N19.HOG0012793"
## [1192] "N19.HOG0007725__N19.HOG0007907"
## [1193] "N19.HOG0007724__N19.HOG0006981__N19.HOG0008555__N19.HOG0012792"
## [1194] "N19.HOG0009891__N19.HOG0009889"
## [1195] "N19.HOG0005495__N19.HOG0005494"
## [1196] "N19.HOG0013948__NA"
## [1197] "N19.HOG0004283__N19.HOG0004284"
## [1198] "N19.HOG0013281__N19.HOG0012794"
## [1199] "N19.HOG0007013__N19.HOG0012093"
## [1200] "N19.HOG0010803__N19.HOG0006767"
## [1201] "N19.HOG0001367__N19.HOG0009916__N19.HOG0016450"
## [1202] "N19.HOG0012648__N19.HOG0004468"
## [1203] "N19.HOG0003633__N19.HOG0000541"
## [1204] "N19.HOG0007253__N19.HOG0011150__N19.HOG0003658"
## [1205] "N19.HOG0008909__N19.HOG0012048"
## [1206] "N19.HOG0007530__N19.HOG0007355"
## [1207] "N19.HOG0009250__N19.HOG0014814"
## [1208] "N19.HOG0004793__N19.HOG0005712__N19.HOG0014337__N19.HOG0005460"
## [1209] "N19.HOG0000043__N19.HOG0000044__N19.HOG0015160"
## [1210] "N19.HOG0012996__N19.HOG0000036"
## [1211] "N19.HOG0011444__N19.HOG0011444"
## [1212] "N19.HOG0009145__N19.HOG0003774"
## [1213] "N19.HOG0007799__N19.HOG0005114__N19.HOG0005219"
## [1214] "N19.HOG0007797__N19.HOG0008910"
## [1215] "N19.HOG0004583__N19.HOG0006545"
## [1216] "NA__N19.HOG0016097__N19.HOG0014311__N19.HOG0000513__N19.HOG0017734__NA__N19.HOG0005606"
## [1217] "N19.HOG0005905__N19.HOG0004127"
## [1218] "N19.HOG0003575__N19.HOG0003032__N19.HOG0009721__N19.HOG0016882"
## [1219] "N19.HOG0006387__N19.HOG0011015"
## [1220] "N19.HOG0011016__N19.HOG0016881"
## [1221] "N19.HOG0003771__N19.HOG0000076__N19.HOG0013558__N19.HOG0007267__N19.HOG0007268"
## [1222] "N19.HOG0009567__N19.HOG0006115__N19.HOG0014329__N19.HOG0000701"
## [1223] "N19.HOG0001556__N19.HOG0014001"
## [1224] "N19.HOG0010268__N19.HOG0009670__N19.HOG0000978__N19.HOG0000978"
## [1225] "N19.HOG0014891__N19.HOG0014016"
## [1226] "N19.HOG0009093__N19.HOG0017732"
## [1227] "N19.HOG0017731__N19.HOG0014892"
## [1228] "N19.HOG0009091__N19.HOG0005615"
## [1229] "N19.HOG0005715__N19.HOG0012387__N19.HOG0005594"
## [1230] "N19.HOG0003585__N19.HOG0011831"
## [1231] "N19.HOG0011198__N19.HOG0000499"
## [1232] "N19.HOG0004695__N19.HOG0017496"
## [1233] "N19.HOG0013938__N19.HOG0013937"
## [1234] "N19.HOG0012424__N19.HOG0004273"
## [1235] "N19.HOG0004610__N19.HOG0001799"
## [1236] "N19.HOG0013275__N19.HOG0011182"
## [1237] "N19.HOG0006720__N19.HOG0004161"
## [1238] "N19.HOG0013982__N19.HOG0013317__N19.HOG0000857"
## [1239] "N19.HOG0006738__N19.HOG0006881"
## [1240] "N19.HOG0008099__N19.HOG0008549"
## [1241] "N19.HOG0012388__NA"
## [1242] "N19.HOG0004195__N19.HOG0004194"
## [1243] "N19.HOG0004193__N19.HOG0010974__N19.HOG0010973__N19.HOG0006801__NA__NA__NA"
## [1244] "NA__N19.HOG0004246"
## [1245] "NA__N19.HOG0006310"
## [1246] "N19.HOG0007453__N19.HOG0001012__N19.HOG0001012"
## [1247] "N19.HOG0002961__N19.HOG0009887__N19.HOG0006371__N19.HOG0007897__N19.HOG0012070"
## [1248] "N19.HOG0012389__N19.HOG0012390__N19.HOG0017727"
## [1249] "N19.HOG0004300__N19.HOG0012338"
## [1250] "N19.HOG0010390__N19.HOG0005462"
## [1251] "N19.HOG0012071__N19.HOG0006478"
## [1252] "N19.HOG0014650__N19.HOG0004659"
## [1253] "N19.HOG0002524__N19.HOG0018229__N19.HOG0000392"
## [1254] "N19.HOG0000393__N19.HOG0011339"
## [1255] "NA__N19.HOG0005462"
## [1256] "N19.HOG0006477__N19.HOG0006476"
## [1257] "NA__N19.HOG0011339"
## [1258] "N19.HOG0004515__N19.HOG0007164__N19.HOG0007163"
## [1259] "N19.HOG0002961__NA__NA__N19.HOG0007897__NA__N19.HOG0012070"
## [1260] "NA__N19.HOG0012389"
## [1261] "N19.HOG0015456__NA__N19.HOG0003093"
## [1262] "N19.HOG0017043__N19.HOG0006305"
## [1263] "N19.HOG0004605__N19.HOG0004605"
## [1264] "N19.HOG0005914__N19.HOG0015673"
## [1265] "N19.HOG0005417__NA__N19.HOG0001886"
## [1266] "N19.HOG0004891__N19.HOG0009664__N19.HOG0005699__N19.HOG0008338__N19.HOG0007730__N19.HOG0012821__NA__N19.HOG0007206__N19.HOG0007345__N19.HOG0014013__N19.HOG0007559"
## [1267] "NA__N19.HOG0009287"
## [1268] "N19.HOG0001142__N19.HOG0012820"
## [1269] "N19.HOG0018225__N19.HOG0008337__N19.HOG0010619__N19.HOG0013171"
## [1270] "N19.HOG0006016__N19.HOG0004133__N19.HOG0004132"
## [1271] "N19.HOG0008588__N19.HOG0014889__N19.HOG0008336__N19.HOG0009915__N19.HOG0008589"
## [1272] "N19.HOG0010276__N19.HOG0009914__N19.HOG0005415"
## [1273] "N19.HOG0010618__N19.HOG0007205__N19.HOG0007383__N19.HOG0002906"
## [1274] "N19.HOG0011743__N19.HOG0011743__N19.HOG0016326"
## [1275] "N19.HOG0012411__N19.HOG0012412__N19.HOG0013304"
## [1276] "N19.HOG0010064__N19.HOG0008115"
## [1277] "N19.HOG0015670__N19.HOG0016261"
## [1278] "N19.HOG0004208__N19.HOG0007736__N19.HOG0005184__N19.HOG0007735__N19.HOG0009088__N19.HOG0016877"
## [1279] "N19.HOG0007558__N19.HOG0005306__N19.HOG0001707__N19.HOG0017723__N19.HOG0006488"
## [1280] "N19.HOG0007557__N19.HOG0007557__N19.HOG0008585"
## [1281] "N19.HOG0011196__N19.HOG0009087__N19.HOG0007020__N19.HOG0008633__N19.HOG0006743__N19.HOG0006744__N19.HOG0005507__N19.HOG0008584__N19.HOG0014007__N19.HOG0009286__N19.HOG0006015"
## [1282] "N19.HOG0007382__N19.HOG0008335"
## [1283] "N19.HOG0009283__N19.HOG0009285"
## [1284] "N19.HOG0006023__N19.HOG0011742"
## [1285] "N19.HOG0005614__N19.HOG0006882"
## [1286] "N19.HOG0007926__N19.HOG0010073__N19.HOG0006123__N19.HOG0004685__N19.HOG0012113__N19.HOG0012819"
## [1287] "N19.HOG0005909__N19.HOG0012114"
## [1288] "N19.HOG0012405__N19.HOG0006874"
## [1289] "N19.HOG0015514__N19.HOG0011820__N19.HOG0011820__N19.HOG0017032"
## [1290] "N19.HOG0017031__N19.HOG0012351"
## [1291] "NA__N19.HOG0015548__N19.HOG0015548"
## [1292] "N19.HOG0004764__N19.HOG0018120"
## [1293] "N19.HOG0002700__N19.HOG0009476__N19.HOG0009710__N19.HOG0013295__N19.HOG0006111"
## [1294] "N19.HOG0003063__N19.HOG0016874__N19.HOG0015626"
## [1295] "N19.HOG0012081__N19.HOG0012082"
## [1296] "N19.HOG0005376__N19.HOG0005376"
## [1297] "N19.HOG0016171__N19.HOG0007264__N19.HOG0001604"
## [1298] "N19.HOG0017720__N19.HOG0009371"
## [1299] "N19.HOG0002476__N19.HOG0004260__N19.HOG0003917"
## [1300] "N19.HOG0005167__N19.HOG0013135"
## [1301] "N19.HOG0008907__N19.HOG0011090__N19.HOG0015458"
## [1302] "N19.HOG0003715__N19.HOG0009234"
## [1303] "N19.HOG0014829__NA"
## [1304] "N19.HOG0013934__N19.HOG0013933__N19.HOG0005498"
## [1305] "N19.HOG0004849__N19.HOG0003089"
## [1306] "N19.HOG0002831__N19.HOG0005116"
## [1307] "NA__N19.HOG0016751__N19.HOG0009723"
## [1308] "N19.HOG0006357__N19.HOG0006357__N19.HOG0006357"
## [1309] "N19.HOG0013967__N19.HOG0010997"
## [1310] "N19.HOG0004568__N19.HOG0011351"
## [1311] "N19.HOG0007556__N19.HOG0009662__N19.HOG0001705"
## [1312] "N19.HOG0006357__N19.HOG0002924"
## [1313] "N19.HOG0005710__N19.HOG0014863"
## [1314] "N19.HOG0007723__N19.HOG0009052__N19.HOG0007540"
## [1315] "N19.HOG0011835__N19.HOG0011369"
## [1316] "N19.HOG0003372__N19.HOG0012399__N19.HOG0009053__N19.HOG0004740__N19.HOG0005254__N19.HOG0001019"
## [1317] "N19.HOG0005565__N19.HOG0010878"
## [1318] "N19.HOG0001354__N19.HOG0010710__N19.HOG0012789"
## [1319] "N19.HOG0009050__N19.HOG0015627__N19.HOG0004453__N19.HOG0009470__N19.HOG0006716__N19.HOG0007905"
## [1320] "N19.HOG0003345__N19.HOG0008305__N19.HOG0009051"
## [1321] "N19.HOG0000803__N19.HOG0006239"
## [1322] "N19.HOG0006544__N19.HOG0003551__N19.HOG0006802__N19.HOG0006802"
## [1323] "N19.HOG0009835__N19.HOG0002709__N19.HOG0003241__N19.HOG0015516__N19.HOG0015149"
## [1324] "N19.HOG0004620__N19.HOG0013997"
## [1325] "N19.HOG0001898__N19.HOG0001901__N19.HOG0001897"
## [1326] "N19.HOG0006386__N19.HOG0007203"
## [1327] "N19.HOG0011560__N19.HOG0014877"
## [1328] "N19.HOG0009469__N19.HOG0001564"
## [1329] "N19.HOG0005587__N19.HOG0013341__N19.HOG0003149"
## [1330] "N19.HOG0004898__N19.HOG0004899"
## [1331] "N19.HOG0010601__N19.HOG0017708__N19.HOG0011006__N19.HOG0011006"
## [1332] "N19.HOG0013972__N19.HOG0000473"
## [1333] "N19.HOG0001161__N19.HOG0016435"
## [1334] "N19.HOG0002145__N19.HOG0017709"
## [1335] "N19.HOG0016258__N19.HOG0001008__N19.HOG0001007"
## [1336] "N19.HOG0003144__N19.HOG0006144"
## [1337] "N19.HOG0007358__N19.HOG0008128__N19.HOG0014030"
## [1338] "N19.HOG0005520__N19.HOG0004888__N19.HOG0007007"
## [1339] "N19.HOG0000700__N19.HOG0012824__N19.HOG0006747"
## [1340] "N19.HOG0006152__N19.HOG0014701__N19.HOG0007387"
## [1341] "N19.HOG0014898__N19.HOG0010621"
## [1342] "N19.HOG0013994__N19.HOG0017711__N19.HOG0017712"
## [1343] "N19.HOG0011249__N19.HOG0011249"
## [1344] "N19.HOG0011653__N19.HOG0011653"
## [1345] "N19.HOG0016259__N19.HOG0012392"
## [1346] "N19.HOG0009468__N19.HOG0004273"
## [1347] "N19.HOG0005074__N19.HOG0005073"
## [1348] "N19.HOG0007682__N19.HOG0009697"
## [1349] "N19.HOG0009041__N19.HOG0010254__N19.HOG0009040__N19.HOG0009249"
## [1350] "N19.HOG0011340__NA"
## [1351] "N19.HOG0007868__N19.HOG0006655"
## [1352] "N19.HOG0004109__N19.HOG0003759"
## [1353] "N19.HOG0009568__N19.HOG0004619"
## [1354] "N19.HOG0011088__N19.HOG0016748__N19.HOG0017713"
## [1355] "N19.HOG0005457__N19.HOG0004581"
## [1356] "N19.HOG0008420__N19.HOG0011247__N19.HOG0007796__N19.HOG0006542"
## [1357] "N19.HOG0006543__N19.HOG0008660"
## [1358] "N19.HOG0008661__N19.HOG0008186"
## [1359] "N19.HOG0015719__N19.HOG0013930"
## [1360] "NA__N19.HOG0011249"
## [1361] "N19.HOG0000972__N19.HOG0005074__N19.HOG0005073"
## [1362] "N19.HOG0009042__N19.HOG0000265"
## [1363] "N19.HOG0010056__N19.HOG0013259__NA"
## [1364] "N19.HOG0007682__N19.HOG0009697__N19.HOG0011526"
## [1365] "N19.HOG0011527__N19.HOG0009696__N19.HOG0009041__N19.HOG0010254__NA__N19.HOG0009249"
## [1366] "N19.HOG0012391__N19.HOG0012391"
## [1367] "N19.HOG0011796__N19.HOG0018231"
## [1368] "N19.HOG0008184__N19.HOG0014328__N19.HOG0010500__N19.HOG0013555"
## [1369] "N19.HOG0013554__N19.HOG0010322"
## [1370] "N19.HOG0010234__N19.HOG0003728"
## [1371] "N19.HOG0013553__N19.HOG0008658__N19.HOG0008658"
## [1372] "N19.HOG0014002__N19.HOG0000542"
## [1373] "N19.HOG0008330__N19.HOG0008331"
## [1374] "N19.HOG0008830__N19.HOG0008831"
## [1375] "N19.HOG0016869__N19.HOG0010760__N19.HOG0009279"
## [1376] "N19.HOG0009280__N19.HOG0014881"
## [1377] "N19.HOG0005854__N19.HOG0005854__N19.HOG0009370__N19.HOG0005343__N19.HOG0012586__N19.HOG0002026__N19.HOG0002026__N19.HOG0011248"
## [1378] "N19.HOG0010157__N19.HOG0007997"
## [1379] "N19.HOG0003996__N19.HOG0007998"
## [1380] "N19.HOG0010871__N19.HOG0009783__N19.HOG0004974"
## [1381] "N19.HOG0004537__N19.HOG0015264"
## [1382] "N19.HOG0015463__N19.HOG0006657__N19.HOG0004725"
## [1383] "N19.HOG0011573__N19.HOG0011573"
## [1384] "N19.HOG0004332__N19.HOG0012088"
## [1385] "N19.HOG0004197__N19.HOG0004197"
## [1386] "N19.HOG0000409__N19.HOG0004994"
## [1387] "N19.HOG0007928__N19.HOG0010819__N19.HOG0007207"
## [1388] "N19.HOG0001115__N19.HOG0016186"
## [1389] "N19.HOG0000669__NA"
## [1390] "N19.HOG0012432__N19.HOG0011604__N19.HOG0000286"
## [1391] "N19.HOG0016332__N19.HOG0007932"
## [1392] "N19.HOG0002931__N19.HOG0007201"
## [1393] "N19.HOG0007731__N19.HOG0000973__N19.HOG0008816__N19.HOG0006138"
## [1394] "N19.HOG0017016__N19.HOG0017016"
## [1395] "N19.HOG0011364__N19.HOG0011364__N19.HOG0000761"
## [1396] "N19.HOG0017014__N19.HOG0017015"
## [1397] "N19.HOG0001494__N19.HOG0018115"
## [1398] "N19.HOG0003262__N19.HOG0013940__N19.HOG0004275"
## [1399] "N19.HOG0005895__N19.HOG0004608"
## [1400] "N19.HOG0009267__NA__N19.HOG0014834"
## [1401] "N19.HOG0006131__N19.HOG0006131"
## [1402] "N19.HOG0000961__N19.HOG0016940"
## [1403] "N19.HOG0007376__N19.HOG0002764"
## [1404] "NA__N19.HOG0016979"
## [1405] "N19.HOG0018113__N19.HOG0009727"
## [1406] "N19.HOG0002600__N19.HOG0010610__N19.HOG0010505"
## [1407] "N19.HOG0008827__N19.HOG0004555"
## [1408] "N19.HOG0013324__N19.HOG0001017"
## [1409] "N19.HOG0012108__N19.HOG0013993__N19.HOG0004999"
## [1410] "N19.HOG0002588__N19.HOG0018112__N19.HOG0018111"
## [1411] "N19.HOG0005782__N19.HOG0005782"
## [1412] "N19.HOG0000190__N19.HOG0008481"
## [1413] "N19.HOG0000470__N19.HOG0009077"
## [1414] "N19.HOG0000673__N19.HOG0001658"
## [1415] "N19.HOG0011806__N19.HOG0011818"
## [1416] "N19.HOG0005602__N19.HOG0009065"
## [1417] "N19.HOG0006135__N19.HOG0006134"
## [1418] "N19.HOG0006373__N19.HOG0006373"
## [1419] "N19.HOG0007081__N19.HOG0008663"
## [1420] "N19.HOG0009497__N19.HOG0005189__N19.HOG0010397"
## [1421] "N19.HOG0011822__N19.HOG0007036__N19.HOG0014702"
## [1422] "N19.HOG0008577__N19.HOG0008824"
## [1423] "N19.HOG0009905__N19.HOG0006614__N19.HOG0004738__N19.HOG0002045"
## [1424] "N19.HOG0001209__N19.HOG0001209"
## [1425] "N19.HOG0014703__N19.HOG0007924__N19.HOG0010274"
## [1426] "NA__N19.HOG0014000"
## [1427] "N19.HOG0010072__N19.HOG0001344__N19.HOG0012427"
## [1428] "N19.HOG0001716__N19.HOG0012818"
## [1429] "N19.HOG0006486__N19.HOG0000299__N19.HOG0011363"
## [1430] "N19.HOG0008582__N19.HOG0007925__N19.HOG0007734__N19.HOG0009083__N19.HOG0008829__N19.HOG0008326"
## [1431] "N19.HOG0017758__N19.HOG0002965"
## [1432] "N19.HOG0001163__N19.HOG0015468__N19.HOG0000998"
## [1433] "N19.HOG0001404__N19.HOG0001406"
## [1434] "N19.HOG0012106__N19.HOG0011296__N19.HOG0008119__N19.HOG0008120"
## [1435] "NA__N19.HOG0001316__N19.HOG0001317"
## [1436] "N19.HOG0010038__N19.HOG0001865__N19.HOG0007934"
## [1437] "N19.HOG0008125__N19.HOG0006258"
## [1438] "N19.HOG0008126__N19.HOG0007935__N19.HOG0016763__N19.HOG0007212__N19.HOG0008264"
## [1439] "N19.HOG0009779__N19.HOG0009779"
## [1440] "N19.HOG0007570__N19.HOG0011042"
## [1441] "N19.HOG0007531__N19.HOG0007356"
## [1442] "N19.HOG0007717__N19.HOG0007357__N19.HOG0008299__N19.HOG0008785"
## [1443] "N19.HOG0007900__N19.HOG0007899__N19.HOG0010260__N19.HOG0010260"
## [1444] "N19.HOG0006535__N19.HOG0005245"
## [1445] "N19.HOG0007902__N19.HOG0008300__N19.HOG0008786__N19.HOG0003233__N19.HOG0005595"
## [1446] "N19.HOG0012107__N19.HOG0014837"
## [1447] "N19.HOG0006304__N19.HOG0012992"
## [1448] "N19.HOG0016266__N19.HOG0016266"
## [1449] "N19.HOG0006353__N19.HOG0006351__N19.HOG0012257"
## [1450] "N19.HOG0014762__N19.HOG0016355"
## [1451] "N19.HOG0017029__N19.HOG0002733__N19.HOG0007063"
## [1452] "N19.HOG0003385__N19.HOG0006305"
## [1453] "N19.HOG0009781__N19.HOG0001954"
## [1454] "N19.HOG0004972__N19.HOG0004973__N19.HOG0013562__N19.HOG0015868"
## [1455] "N19.HOG0010963__N19.HOG0014490"
## [1456] "N19.HOG0013349__N19.HOG0011350__N19.HOG0011350"
## [1457] "N19.HOG0004944__N19.HOG0007635"
## [1458] "N19.HOG0004723__N19.HOG0006183"
## [1459] "N19.HOG0017757__N19.HOG0006691__N19.HOG0006691"
## [1460] "N19.HOG0011654__N19.HOG0004416__N19.HOG0004417__N19.HOG0009569"
## [1461] "N19.HOG0014340__N19.HOG0015874"
## [1462] "N19.HOG0001033__NA"
## [1463] "N19.HOG0013988__N19.HOG0005247__N19.HOG0005247__NA__N19.HOG0013533__N19.HOG0010816__N19.HOG0004018"
## [1464] "N19.HOG0005410__N19.HOG0005410__N19.HOG0006241__N19.HOG0008121__N19.HOG0014739"
## [1465] "N19.HOG0010032__N19.HOG0017754"
## [1466] "N19.HOG0011682__N19.HOG0007319__N19.HOG0006424__N19.HOG0004840"
## [1467] "N19.HOG0011682__N19.HOG0007319__N19.HOG0006424"
## [1468] "N19.HOG0006424__N19.HOG0011682__N19.HOG0007319__NA"
## [1469] "N19.HOG0006424__N19.HOG0004840"
## [1470] "N19.HOG0011682__N19.HOG0007319"
## [1471] "NA__N19.HOG0004817__N19.HOG0004476__N19.HOG0011924__N19.HOG0011923"
## [1472] "N19.HOG0012422__N19.HOG0003867"
## [1473] "N19.HOG0010136__N19.HOG0013484"
## [1474] "N19.HOG0013483__N19.HOG0005727__N19.HOG0010648"
## [1475] "N19.HOG0012091__N19.HOG0000810"
## [1476] "N19.HOG0014836__N19.HOG0000061"
## [1477] "N19.HOG0005896__N19.HOG0005897__N19.HOG0009061__N19.HOG0006600__N19.HOG0011535"
## [1478] "N19.HOG0009474__N19.HOG0005830__N19.HOG0008263__N19.HOG0004949"
## [1479] "N19.HOG0013942__N19.HOG0007011"
## [1480] "N19.HOG0007729__N19.HOG0010571__N19.HOG0003717"
## [1481] "N19.HOG0013303__N19.HOG0012802"
## [1482] "N19.HOG0013962__N19.HOG0010925__N19.HOG0007546__N19.HOG0000390__N19.HOG0005803__N19.HOG0006011"
## [1483] "N19.HOG0013302__N19.HOG0010063"
## [1484] "N19.HOG0009717__N19.HOG0007369"
## [1485] "N19.HOG0013301__N19.HOG0009067"
## [1486] "N19.HOG0006009__N19.HOG0006010__N19.HOG0006010"
## [1487] "N19.HOG0010270__N19.HOG0007545__N19.HOG0009066__N19.HOG0005511__N19.HOG0008747__N19.HOG0007368"
## [1488] "N19.HOG0004475__N19.HOG0011807"
## [1489] "N19.HOG0008565__N19.HOG0003235"
## [1490] "N19.HOG0010810__N19.HOG0010811"
## [1491] "N19.HOG0013960__N19.HOG0014856__N19.HOG0001641"
## [1492] "N19.HOG0015835__N19.HOG0012408"
## [1493] "N19.HOG0003447__N19.HOG0003586__N19.HOG0008325"
## [1494] "N19.HOG0007193__N19.HOG0012804__N19.HOG0007192__N19.HOG0006727__N19.HOG0004614"
## [1495] "N19.HOG0003754__N19.HOG0003254__N19.HOG0011549"
## [1496] "N19.HOG0002744__N19.HOG0002742"
## [1497] "N19.HOG0004875__N19.HOG0004812__N19.HOG0009895__N19.HOG0009718"
## [1498] "N19.HOG0001859__N19.HOG0013963"
## [1499] "N19.HOG0012074__N19.HOG0006355__N19.HOG0005692__N19.HOG0008301__N19.HOG0004992__N19.HOG0010798"
## [1500] "N19.HOG0002293__N19.HOG0010262__N19.HOG0010261"
## [1501] "N19.HOG0011860__N19.HOG0014009"
## [1502] "N19.HOG0016885__N19.HOG0007535__N19.HOG0003307__N19.HOG0012396__N19.HOG0008098"
## [1503] "N19.HOG0016884__N19.HOG0018126"
## [1504] "N19.HOG0010013__NA__N19.HOG0007537"
## [1505] "N19.HOG0011530__N19.HOG0005797"
## [1506] "N19.HOG0008303__N19.HOG0006594"
## [1507] "N19.HOG0005502__N19.HOG0008759__N19.HOG0003343"
## [1508] "N19.HOG0007360__N19.HOG0008302__N19.HOG0007533"
## [1509] "N19.HOG0001808__N19.HOG0005694"
## [1510] "N19.HOG0006865__N19.HOG0017056"
## [1511] "N19.HOG0006865__N19.HOG0006865"
## [1512] "N19.HOG0013917__N19.HOG0003481"
## [1513] "N19.HOG0007006__N19.HOG0017741__N19.HOG0009698__N19.HOG0012075"
## [1514] "N19.HOG0007532__N19.HOG0004739__N19.HOG0004124"
## [1515] "N19.HOG0012779__N19.HOG0007718"
## [1516] "N19.HOG0002313__N19.HOG0004570__N19.HOG0004570"
## [1517] "N19.HOG0004561__N19.HOG0003655__N19.HOG0005499__N19.HOG0007359"
## [1518] "N19.HOG0009068__N19.HOG0001278"
## [1519] "N19.HOG0006383__N19.HOG0009272"
## [1520] "N19.HOG0005506__N19.HOG0008791__N19.HOG0012947"
## [1521] "N19.HOG0001778__N19.HOG0008550"
## [1522] "N19.HOG0006003__N19.HOG0011759"
## [1523] "N19.HOG0001262__N19.HOG0003755__N19.HOG0005180"
## [1524] "N19.HOG0005395__N19.HOG0009711"
## [1525] "N19.HOG0006378__N19.HOG0009213"
## [1526] "N19.HOG0017737__N19.HOG0008113__N19.HOG0012099"
## [1527] "N19.HOG0000009__N19.HOG0013296__N19.HOG0011443"
## [1528] "N19.HOG0012406__N19.HOG0015640"
## [1529] "N19.HOG0007912__N19.HOG0007912__N19.HOG0002054__N19.HOG0008319"
## [1530] "N19.HOG0000811__N19.HOG0016169"
## [1531] "N19.HOG0001143__N19.HOG0000450"
## [1532] "N19.HOG0004515__N19.HOG0007164__N19.HOG0007163"
## [1533] "N19.HOG0006309__N19.HOG0006310"
## [1534] "N19.HOG0004913__N19.HOG0004246"
## [1535] "N19.HOG0013904__N19.HOG0004193__N19.HOG0006801__N19.HOG0006800__N19.HOG0003432"
## [1536] "N19.HOG0004195__N19.HOG0004194"
## [1537] "N19.HOG0012388__N19.HOG0001122"
## [1538] "N19.HOG0006125__NA"
## [1539] "N19.HOG0009281__NA"
## [1540] "N19.HOG0017022__NA"
## [1541] "NA__NA__Oki4"
## [1542] "N19.HOG0010800__N19.HOG0018180"
## [1543] "NA__N19.HOG0007959"
## [1544] "NA__NA__N19.HOG0008508"
## [1545] "N19.HOG0007160__N19.HOG0008587__N19.HOG0006021__N19.HOG0010508__N19.HOG0009097"
## [1546] "N19.HOG0013403__N19.HOG0017167"
## [1547] "N19.HOG0010646__N19.HOG0001199__N19.HOG0014764"
## [1548] "N19.HOG0007332__N19.HOG0002749"
## [1549] "N19.HOG0002066__N19.HOG0000947"
## [1550] "N19.HOG0004970__N19.HOG0013564__N19.HOG0010088"
## [1551] "N19.HOG0009048__N19.HOG0001714__N19.HOG0004528__N19.HOG0007762"
## [1552] "N19.HOG0012048__N19.HOG0000440"
## [1553] "N19.HOG0012638__N19.HOG0004319__N19.HOG0000971"
## [1554] "N19.HOG0018130__N19.HOG0015249"
## [1555] "N19.HOG0011303__N19.HOG0006248"
## [1556] "N19.HOG0007040__N19.HOG0011183"
## [1557] "N19.HOG0008419__N19.HOG0003194"
## [1558] "N19.HOG0009562__N19.HOG0002082"
## [1559] "N19.HOG0016779__N19.HOG0008238"
## [1560] "N19.HOG0012351__NA__NA"
## [1561] "N19.HOG0013089__N19.HOG0013089__N19.HOG0013089"
## [1562] "N19.HOG0012661__N19.HOG0009411"
## [1563] "NA__NA__Oki5"
## [1564] "N19.HOG0012261__N19.HOG0014392"
## [1565] "N19.HOG0002505__N19.HOG0001530"
## [1566] "N19.HOG0000763__N19.HOG0004849"
## [1567] "N19.HOG0011650__N19.HOG0004229"
## [1568] "N19.HOG0013730__NA"
## [1569] "N19.HOG0017024__N19.HOG0004324__N19.HOG0004324"
## [1570] "N19.HOG0018157__N19.HOG0011728"
## [1571] "N19.HOG0001432__N19.HOG0001432__N19.HOG0004889__N19.HOG0004890__N19.HOG0008484"
## [1572] "N19.HOG0015480__N19.HOG0006344"
## [1573] "N19.HOG0003047__N19.HOG0002333"
## [1574] "N19.HOG0000781__N19.HOG0003501"
## [1575] "N19.HOG0014757__N19.HOG0014757"
## [1576] "N19.HOG0006500__N19.HOG0010869"
## [1577] "N19.HOG0012229__N19.HOG0012229"
## [1578] "N19.HOG0011557__N19.HOG0012105"
## [1579] "N19.HOG0006715__N19.HOG0004508"
## [1580] "N19.HOG0000897__N19.HOG0014265"
## [1581] "N19.HOG0012348__N19.HOG0006833"
## [1582] "NA__N19.HOG0002761__N19.HOG0014244"
## [1583] "N19.HOG0002343__N19.HOG0010733"
## [1584] "N19.HOG0013439__N19.HOG0000503"
## [1585] "N19.HOG0001616__N19.HOG0012029"
## [1586] "N19.HOG0007046__N19.HOG0007046"
## [1587] "N19.HOG0010781__N19.HOG0011395__N19.HOG0017005"
## [1588] "N19.HOG0003506__N19.HOG0011036"
## [1589] "N19.HOG0010498__N19.HOG0014487"
## [1590] "N19.HOG0010481__N19.HOG0010482__N19.HOG0004074__N19.HOG0002973__N19.HOG0002974"
## [1591] "N19.HOG0014674__N19.HOG0003427"
## [1592] "N19.HOG0008725__N19.HOG0011152"
## [1593] "N19.HOG0013418__N19.HOG0001992"
## [1594] "N19.HOG0014712__N19.HOG0004550"
## [1595] "N19.HOG0014712__NA"
## [1596] "N19.HOG0003785__N19.HOG0008181__N19.HOG0005755"
## [1597] "N19.HOG0004487__N19.HOG0018234"
## [1598] "N19.HOG0011743__NA"
## [1599] "N19.HOG0011766__N19.HOG0016995__N19.HOG0004543"
## [1600] "N19.HOG0003600__N19.HOG0009732"
## [1601] "N19.HOG0011898__N19.HOG0011897"
## [1602] "N19.HOG0013949__N19.HOG0000831"
## [1603] "N19.HOG0002882__N19.HOG0002697__N19.HOG0002697"
## [1604] "N19.HOG0015839__N19.HOG0015716"
## [1605] "N19.HOG0009263__N19.HOG0009264"
## [1606] "NA__N19.HOG0015481"
## [1607] "N19.HOG0018024__N19.HOG0004289"
## [1608] "N19.HOG0004440__N19.HOG0011161"
## [1609] "N19.HOG0009305__N19.HOG0010055__N19.HOG0012848"
## [1610] "N19.HOG0013389__N19.HOG0013392"
## [1611] "N19.HOG0006157__N19.HOG0018014__N19.HOG0007693__N19.HOG0014941__N19.HOG0004624"
## [1612] "NA__N19.HOG0002861__N19.HOG0011208"
## [1613] "N19.HOG0004849__N19.HOG0004849"
## [1614] "N19.HOG0001414__N19.HOG0012734"
## [1615] "N19.HOG0001356__N19.HOG0018214__N19.HOG0011435"
## [1616] "N19.HOG0000940__N19.HOG0018009"
## [1617] "N19.HOG0006923__N19.HOG0003654"
## [1618] "N19.HOG0006641__N19.HOG0011698"
## [1619] "N19.HOG0012805__N19.HOG0004935"
## [1620] "N19.HOG0012646__N19.HOG0012646"
## [1621] "N19.HOG0013082__N19.HOG0003958__N19.HOG0007236"
## [1622] "N19.HOG0009258__N19.HOG0005369"
## [1623] "N19.HOG0011948__N19.HOG0009047"
## [1624] "N19.HOG0012594__N19.HOG0012594"
## [1625] "N19.HOG0005229__N19.HOG0000530__N19.HOG0000530"
## [1626] "N19.HOG0004711__N19.HOG0014360__N19.HOG0007352"
## [1627] "N19.HOG0011939__N19.HOG0003506"
## [1628] "N19.HOG0000842__N19.HOG0003722"
## [1629] "N19.HOG0007167__N19.HOG0014750"
## [1630] "N19.HOG0011602__N19.HOG0004849"
## [1631] "N19.HOG0013660__N19.HOG0018236"
## [1632] "N19.HOG0017989__N19.HOG0014515__N19.HOG0008771"
## [1633] "N19.HOG0006894__N19.HOG0011931"
## [1634] "N19.HOG0008657__N19.HOG0013365"
## [1635] "N19.HOG0010645__N19.HOG0014279"
## [1636] "N19.HOG0014049__N19.HOG0015569"
## [1637] "N19.HOG0010457__N19.HOG0004957__N19.HOG0009308"
## [1638] "N19.HOG0005963__N19.HOG0011101"
## [1639] "N19.HOG0003072__N19.HOG0003070"
## [1640] "N19.HOG0001989__N19.HOG0001989"
## [1641] "N19.HOG0010319__N19.HOG0009777__N19.HOG0010399__N19.HOG0010318__N19.HOG0007795"
## [1642] "N19.HOG0005760__N19.HOG0006799__N19.HOG0006653"
## [1643] "N19.HOG0005419__N19.HOG0005108"
## [1644] "N19.HOG0001891__N19.HOG0001890__N19.HOG0002923"
## [1645] "N19.HOG0013551__N19.HOG0005370__N19.HOG0016959"
## [1646] "NA__N19.HOG0016959"
## [1647] "N19.HOG0015239__NA"
## [1648] "NA__N19.HOG0013055"
## [1649] "N19.HOG0009398__N19.HOG0009398"
## [1650] "N19.HOG0000844__N19.HOG0008846"
## [1651] "N19.HOG0005452__N19.HOG0005453__N19.HOG0005454__N19.HOG0000468"
## [1652] "N19.HOG0001548__N19.HOG0012927"
## [1653] "N19.HOG0015713__N19.HOG0016391"
## [1654] "N19.HOG0014882__N19.HOG0001507"
## [1655] "N19.HOG0006745__N19.HOG0010982__N19.HOG0008329__N19.HOG0008123__N19.HOG0007381__N19.HOG0013334"
## [1656] "N19.HOG0011050__N19.HOG0001362__N19.HOG0001361"
## [1657] "N19.HOG0005217__N19.HOG0000504"
## [1658] "N19.HOG0003567__N19.HOG0008599"
## [1659] "N19.HOG0007582__N19.HOG0000207"
## [1660] "N19.HOG0007626__N19.HOG0000892"
## [1661] "N19.HOG0000285__N19.HOG0002128"
## [1662] "N19.HOG0002842__N19.HOG0001137__N19.HOG0003663"
## [1663] "N19.HOG0013267__N19.HOG0014824"
## [1664] "N19.HOG0000324__N19.HOG0012852"
## [1665] "N19.HOG0005636__N19.HOG0014535"
## [1666] "N19.HOG0002512__N19.HOG0010449"
## [1667] "N19.HOG0015242__N19.HOG0017904__N19.HOG0000276"
## [1668] "N19.HOG0000323__N19.HOG0000323__N19.HOG0000547"
## [1669] "N19.HOG0010822__N19.HOG0017903"
## [1670] "N19.HOG0001538__N19.HOG0011429"
## [1671] "N19.HOG0011842__N19.HOG0011524"
## [1672] "N19.HOG0000852__N19.HOG0000852__N19.HOG0012240"
## [1673] "N19.HOG0013131__N19.HOG0001259"
## [1674] "N19.HOG0007794__N19.HOG0015334"
## [1675] "N19.HOG0005560__N19.HOG0010150__N19.HOG0010391__N19.HOG0009773"
## [1676] "N19.HOG0010392__N19.HOG0017895__N19.HOG0001375__N19.HOG0001756"
## [1677] "N19.HOG0012654__N19.HOG0001830__N19.HOG0016198"
## [1678] "N19.HOG0011595__N19.HOG0008062"
## [1679] "N19.HOG0003903__N19.HOG0015629"
## [1680] "N19.HOG0015921__N19.HOG0009180__N19.HOG0009183"
## [1681] "N19.HOG0005554__N19.HOG0007485"
## [1682] "N19.HOG0002632__N19.HOG0009816"
## [1683] "N19.HOG0015759__N19.HOG0012494"
## [1684] "N19.HOG0015488__N19.HOG0017854"
## [1685] "N19.HOG0000726__NA__N19.HOG0010781"
## [1686] "N19.HOG0010164__N19.HOG0010328__N19.HOG0006940__N19.HOG0007806__N19.HOG0007644"
## [1687] "NA__N19.HOG0001674"
## [1688] "N19.HOG0008286__N19.HOG0016200"
## [1689] "N19.HOG0000327__N19.HOG0004377"
## [1690] "N19.HOG0009473__NA__N19.HOG0003636"
## [1691] "N19.HOG0009700__N19.HOG0005598"
## [1692] "N19.HOG0006130__N19.HOG0006240"
## [1693] "N19.HOG0009054__N19.HOG0009054__N19.HOG0007906"
## [1694] "N19.HOG0002210__N19.HOG0018237"
## [1695] "N19.HOG0012410__N19.HOG0012410"
## [1696] "N19.HOG0012410__NA"
## [1697] "N19.HOG0003492__N19.HOG0000384"
## [1698] "N19.HOG0006102__N19.HOG0012691__N19.HOG0010441"
## [1699] "N19.HOG0009192__N19.HOG0013718"
## [1700] "N19.HOG0012470__N19.HOG0010840__N19.HOG0011592"
## [1701] "N19.HOG0007084__N19.HOG0007083__N19.HOG0012995"
## [1702] "N19.HOG0003029__N19.HOG0018124__N19.HOG0012212"
## [1703] "N19.HOG0012495__N19.HOG0006758"
## [1704] "N19.HOG0007401__NA"
## [1705] "N19.HOG0005564__NA__N19.HOG0013622"
## [1706] "N19.HOG0012524__N19.HOG0018125"
## [1707] "N19.HOG0008465__N19.HOG0011115"
## [1708] "N19.HOG0011435__N19.HOG0015989"
## [1709] "N19.HOG0015475__N19.HOG0015475"
## [1710] "N19.HOG0018238__N19.HOG0015224__N19.HOG0013177"
## [1711] "N19.HOG0016333__NA"
## [1712] "NA__N19.HOG0007342__N19.HOG0015661__N19.HOG0014875__N19.HOG0001082"
## [1713] "N19.HOG0013548__N19.HOG0005596"
## [1714] "N19.HOG0002826__N19.HOG0001015"
## [1715] "N19.HOG0013785__N19.HOG0013785__N19.HOG0013785"
## [1716] "N19.HOG0017039__NA"
## [1717] "N19.HOG0001338__N19.HOG0001338"
## [1718] "N19.HOG0010256__N19.HOG0010255"
## [1719] "N19.HOG0004826__N19.HOG0002215"
## [1720] "N19.HOG0012496__N19.HOG0010429"
## [1721] "N19.HOG0016248__N19.HOG0008364__N19.HOG0004298"
## [1722] "N19.HOG0004989__N19.HOG0004990__N19.HOG0018134__N19.HOG0018135"
## [1723] "N19.HOG0009909__N19.HOG0009909"
## [1724] "N19.HOG0014172__N19.HOG0013462"
## [1725] "N19.HOG0013713__N19.HOG0013713"
## [1726] "N19.HOG0003610__N19.HOG0012045__N19.HOG0002676"
## [1727] "N19.HOG0012892__N19.HOG0012892"
## [1728] "N19.HOG0004704__N19.HOG0005544__N19.HOG0005545"
## [1729] "N19.HOG0016660__N19.HOG0013433"
## [1730] "N19.HOG0012262__N19.HOG0004591"
## [1731] "N19.HOG0011287__N19.HOG0013137"
## [1732] "N19.HOG0013199__N19.HOG0010613"
## [1733] "N19.HOG0004216__N19.HOG0016859"
## [1734] "N19.HOG0010443__N19.HOG0006983"
## [1735] "N19.HOG0010410__N19.HOG0003964"
## [1736] "N19.HOG0018240__N19.HOG0001322"
## [1737] "N19.HOG0011171__N19.HOG0007705__N19.HOG0008532__N19.HOG0016772__N19.HOG0013851"
## [1738] "N19.HOG0007173__N19.HOG0007174__N19.HOG0008096__N19.HOG0012394__N19.HOG0014818"
## [1739] "N19.HOG0001754__N19.HOG0018137"
## [1740] "N19.HOG0018138__N19.HOG0011830__N19.HOG0015209"
## [1741] "N19.HOG0003879__N19.HOG0003878__N19.HOG0003880"
## [1742] "N19.HOG0014187__N19.HOG0012917"
## [1743] "NA__N19.HOG0010699__N19.HOG0007293"
## [1744] "N19.HOG0014256__N19.HOG0013506"
## [1745] "N19.HOG0006122__N19.HOG0005575"
## [1746] "NA__N19.HOG0001212"
## [1747] "N19.HOG0011432__N19.HOG0011432__N19.HOG0000382"
## [1748] "N19.HOG0001539__N19.HOG0001544"
## [1749] "N19.HOG0018140__N19.HOG0014991"
## [1750] "N19.HOG0007581__N19.HOG0007581"
## [1751] "N19.HOG0014145__N19.HOG0018141__N19.HOG0002970"
## [1752] "N19.HOG0016407__N19.HOG0013101"
## [1753] "N19.HOG0001101__N19.HOG0015483"
## [1754] "N19.HOG0010442__N19.HOG0003376"
## [1755] "N19.HOG0003537__N19.HOG0016914"
## [1756] "N19.HOG0003843__N19.HOG0002682"
## [1757] "N19.HOG0002032__N19.HOG0004759"
## [1758] "N19.HOG0006939__N19.HOG0007281__N19.HOG0003368"
## [1759] "N19.HOG0011603__N19.HOG0010085__N19.HOG0010085"
## [1760] "N19.HOG0014940__N19.HOG0010086__N19.HOG0014069"
## [1761] "N19.HOG0009968__N19.HOG0004916"
## [1762] "N19.HOG0010336__N19.HOG0000793__N19.HOG0007807__N19.HOG0005037"
## [1763] "N19.HOG0008694__N19.HOG0006316__N19.HOG0008433"
## [1764] "N19.HOG0011908__N19.HOG0003087"
## [1765] "N19.HOG0012187__N19.HOG0012187"
## [1766] "N19.HOG0001760__N19.HOG0011401"
## [1767] "N19.HOG0004691__N19.HOG0004691"
## [1768] "N19.HOG0000389__N19.HOG0000381"
## [1769] "N19.HOG0003123__N19.HOG0005821__N19.HOG0008614__N19.HOG0005433__N19.HOG0007756"
## [1770] "N19.HOG0008988__N19.HOG0013833"
## [1771] "N19.HOG0000338__N19.HOG0014729"
## [1772] "N19.HOG0018212__N19.HOG0012019"
## [1773] "N19.HOG0011542__N19.HOG0011543"
## [1774] "N19.HOG0001625__N19.HOG0013956__N19.HOG0009271__N19.HOG0007141__N19.HOG0004014"
## [1775] "N19.HOG0000115__N19.HOG0001921"
## [1776] "N19.HOG0015086__N19.HOG0015086"
## [1777] "N19.HOG0015497__N19.HOG0015497"
## [1778] "N19.HOG0011749__N19.HOG0011749__N19.HOG0011749__N19.HOG0011231"
## [1779] "N19.HOG0018143__N19.HOG0013777"
## [1780] "N19.HOG0011746__N19.HOG0011746"
## [1781] "N19.HOG0011214__N19.HOG0011214"
## [1782] "N19.HOG0011084__N19.HOG0007450__N19.HOG0006654__N19.HOG0008410"
## [1783] "N19.HOG0015663__N19.HOG0012583"
## [1784] "N19.HOG0013609__N19.HOG0011562"
## [1785] "N19.HOG0015321__N19.HOG0013609"
## [1786] "N19.HOG0005772__N19.HOG0006080__N19.HOG0016781"
## [1787] "N19.HOG0014106__N19.HOG0004731"
## [1788] "N19.HOG0000506__N19.HOG0000506"
## [1789] "N19.HOG0001920__N19.HOG0016189"
## [1790] "N19.HOG0010085__N19.HOG0001663"
## [1791] "N19.HOG0015731__NA"
## [1792] "N19.HOG0000341__N19.HOG0018146"
## [1793] "N19.HOG0001686__N19.HOG0014068"
## [1794] "NA__N19.HOG0009292"
## [1795] "N19.HOG0008177__N19.HOG0010677"
## [1796] "N19.HOG0010373__N19.HOG0003972"
## [1797] "N19.HOG0013104__N19.HOG0002841"
## [1798] "N19.HOG0002608__N19.HOG0017034"
## [1799] "N19.HOG0004207__N19.HOG0004295"
## [1800] "N19.HOG0014355__N19.HOG0006430"
## [1801] "N19.HOG0013515__N19.HOG0018149"
## [1802] "NA__N19.HOG0007320"
## [1803] "N19.HOG0013695__N19.HOG0014210"
## [1804] "N19.HOG0018151__N19.HOG0004056"
## [1805] "N19.HOG0007762__N19.HOG0007762__N19.HOG0007762__N19.HOG0015540__N19.HOG0004228__N19.HOG0004229"
## [1806] "N19.HOG0010443__N19.HOG0001170"
## [1807] "N19.HOG0013645__N19.HOG0000344"
## [1808] "N19.HOG0007463__N19.HOG0006047__N19.HOG0006805"
## [1809] "N19.HOG0001809__N19.HOG0009575"
## [1810] "N19.HOG0004410__N19.HOG0011857"
## [1811] "N19.HOG0011857__N19.HOG0003624"
## [1812] "N19.HOG0017022__N19.HOG0003809__N19.HOG0003809"
## [1813] "N19.HOG0010876__N19.HOG0002099"
## [1814] "N19.HOG0007080__N19.HOG0008027__N19.HOG0008508"
## [1815] "N19.HOG0008027__N19.HOG0008508"
## [1816] "N19.HOG0002091__N19.HOG0002094"
## [1817] "N19.HOG0011147__N19.HOG0015423"
## [1818] "NA__N19.HOG0010014"
## [1819] "N19.HOG0003288__N19.HOG0013634__N19.HOG0009260__N19.HOG0006957__N19.HOG0006370__N19.HOG0011519__N19.HOG0011519__N19.HOG0005442__N19.HOG0005441"
## [1820] "N19.HOG0003289__N19.HOG0005777__N19.HOG0005777"
## [1821] "N19.HOG0007080__N19.HOG0006956"
## [1822] "NA__N19.HOG0001304"
## [1823] "N19.HOG0013180__N19.HOG0013179__N19.HOG0013500"
## [1824] "N19.HOG0014259__N19.HOG0011643"
## [1825] "N19.HOG0009177__NA__N19.HOG0006669__N19.HOG0005289"
## [1826] "N19.HOG0005837__N19.HOG0007301__N19.HOG0010534__N19.HOG0014488__N19.HOG0015253__N19.HOG0008022"
## [1827] "N19.HOG0011460__N19.HOG0010312__N19.HOG0002325"
## [1828] "N19.HOG0000242__N19.HOG0002634"
## [1829] "N19.HOG0005558__N19.HOG0006527__N19.HOG0005921"
## [1830] "N19.HOG0013788__N19.HOG0009558__N19.HOG0007871__N19.HOG0006761__N19.HOG0010682"
## [1831] "N19.HOG0001427__N19.HOG0001423"
## [1832] "N19.HOG0011633__N19.HOG0011633"
## [1833] "NA__N19.HOG0013492__N19.HOG0007982"
## [1834] "N19.HOG0001174__N19.HOG0014233"
## [1835] "N19.HOG0013384__N19.HOG0015081"
## [1836] "N19.HOG0001051__N19.HOG0012283"
## [1837] "N19.HOG0008223__N19.HOG0008223__N19.HOG0014677"
## [1838] "N19.HOG0015019__N19.HOG0006281"
## [1839] "N19.HOG0004777__N19.HOG0001464"
## [1840] "N19.HOG0015545__N19.HOG0016861"
## [1841] "N19.HOG0014652__N19.HOG0010315"
## [1842] "N19.HOG0002985__N19.HOG0013490"
## [1843] "N19.HOG0009943__N19.HOG0014231__N19.HOG0012538"
## [1844] "N19.HOG0012215__N19.HOG0003917"
## [1845] "N19.HOG0002476__N19.HOG0004260"
## [1846] "N19.HOG0013640__N19.HOG0008225__N19.HOG0008702__N19.HOG0007297__N19.HOG0003948__N19.HOG0007658"
## [1847] "N19.HOG0000693__N19.HOG0009986__N19.HOG0009809__N19.HOG0013639__N19.HOG0014481"
## [1848] "N19.HOG0012905__N19.HOG0000875__N19.HOG0015021"
## [1849] "N19.HOG0009012__N19.HOG0010307"
## [1850] "N19.HOG0007441__N19.HOG0009554__N19.HOG0008803__N19.HOG0001571__N19.HOG0006783"
## [1851] "N19.HOG0010308__N19.HOG0009555__N19.HOG0007442__N19.HOG0003776"
## [1852] "N19.HOG0000851__N19.HOG0009748"
## [1853] "N19.HOG0002644__N19.HOG0013799"
## [1854] "N19.HOG0013489__N19.HOG0012623"
## [1855] "N19.HOG0010306__N19.HOG0004843"
## [1856] "N19.HOG0006756__N19.HOG0009033__N19.HOG0009033"
## [1857] "N19.HOG0009754__N19.HOG0012500"
## [1858] "N19.HOG0011054__N19.HOG0004705"
## [1859] "N19.HOG0010154__N19.HOG0017689"
## [1860] "N19.HOG0015022__N19.HOG0009284__N19.HOG0015087"
## [1861] "N19.HOG0014184__NA"
## [1862] "N19.HOG0006284__N19.HOG0006903__N19.HOG0009116__N19.HOG0006902__N19.HOG0010850__N19.HOG0006041"
## [1863] "N19.HOG0005739__N19.HOG0005740__N19.HOG0014717__N19.HOG0008165"
## [1864] "N19.HOG0016254__N19.HOG0006040"
## [1865] "N19.HOG0011892__N19.HOG0002257__N19.HOG0015039__N19.HOG0015779__N19.HOG0017690"
## [1866] "N19.HOG0012913__N19.HOG0003413"
## [1867] "N19.HOG0001226__NA"
## [1868] "N19.HOG0002647__N19.HOG0003708"
## [1869] "N19.HOG0001929__N19.HOG0003460__NA"
## [1870] "N19.HOG0003588__N19.HOG0005604__N19.HOG0001396"
## [1871] "N19.HOG0003114__N19.HOG0006775__N19.HOG0007246__N19.HOG0010041"
## [1872] "N19.HOG0004435__N19.HOG0004865__N19.HOG0011143__NA"
## [1873] "N19.HOG0003026__N19.HOG0011407__N19.HOG0003674__N19.HOG0007070"
## [1874] "N19.HOG0010344__N19.HOG0016797__N19.HOG0014474__N19.HOG0005058"
## [1875] "N19.HOG0004009__N19.HOG0008220__N19.HOG0015936__N19.HOG0013635__N19.HOG0005556__N19.HOG0009807__N19.HOG0008221__N19.HOG0006202__N19.HOG0005651__N19.HOG0005650"
## [1876] "N19.HOG0006330__N19.HOG0007299__N19.HOG0004588"
## [1877] "N19.HOG0018181__N19.HOG0014469"
## [1878] "N19.HOG0009538__N19.HOG0007965__N19.HOG0017764"
## [1879] "N19.HOG0006140__N19.HOG0006645__N19.HOG0013474__N19.HOG0010852__N19.HOG0009538"
## [1880] "N19.HOG0005418__N19.HOG0008381"
## [1881] "N19.HOG0007964__N19.HOG0005416"
## [1882] "N19.HOG0006845__N19.HOG0012201"
## [1883] "N19.HOG0006909__N19.HOG0006909"
## [1884] "N19.HOG0014138__N19.HOG0002719"
## [1885] "N19.HOG0009658__N19.HOG0012489__N19.HOG0007949__N19.HOG0011216"
## [1886] "N19.HOG0008619__N19.HOG0008619"
## [1887] "N19.HOG0016214__N19.HOG0008156"
## [1888] "N19.HOG0003491__N19.HOG0003493"
## [1889] "N19.HOG0015518__N19.HOG0001397"
## [1890] "N19.HOG0006556__N19.HOG0009400__N19.HOG0008453__N19.HOG0010040__N19.HOG0005284__N19.HOG0007691"
## [1891] "N19.HOG0009172__N19.HOG0005124__N19.HOG0005261"
## [1892] "N19.HOG0004773__N19.HOG0004773__N19.HOG0015554__N19.HOG0015554"
## [1893] "N19.HOG0012732__N19.HOG0016993"
## [1894] "N19.HOG0015555__N19.HOG0016353"
## [1895] "N19.HOG0008945__NA__N19.HOG0005448__N19.HOG0007829__N19.HOG0001950__N19.HOG0003649__N19.HOG0012009"
## [1896] "N19.HOG0001385__N19.HOG0001384__N19.HOG0006667"
## [1897] "N19.HOG0007226__N19.HOG0007226__N19.HOG0011605__N19.HOG0011045"
## [1898] "N19.HOG0010567__N19.HOG0007755__N19.HOG0009226__N19.HOG0010285__N19.HOG0018182__N19.HOG0002306"
## [1899] "N19.HOG0004805__N19.HOG0004806"
## [1900] "N19.HOG0012520__N19.HOG0012520__N19.HOG0013102"
## [1901] "N19.HOG0001740__N19.HOG0016891"
## [1902] "N19.HOG0012199__N19.HOG0005317__NA"
## [1903] "N19.HOG0005931__N19.HOG0004408__N19.HOG0012519__N19.HOG0005625"
## [1904] "N19.HOG0010666__N19.HOG0014191"
## [1905] "N19.HOG0017766__N19.HOG0016512__N19.HOG0010667"
## [1906] "NA__N19.HOG0017767"
## [1907] "N19.HOG0009120__N19.HOG0007060"
## [1908] "N19.HOG0007986__N19.HOG0009648__N19.HOG0005557__N19.HOG0003803__N19.HOG0014243"
## [1909] "N19.HOG0009355__N19.HOG0009355"
## [1910] "N19.HOG0007426__N19.HOG0008378"
## [1911] "N19.HOG0009534__N19.HOG0009216__N19.HOG0008627__N19.HOG0009336__N19.HOG0008266"
## [1912] "N19.HOG0010114__N19.HOG0012911"
## [1913] "N19.HOG0003530__N19.HOG0013346"
## [1914] "N19.HOG0014657__N19.HOG0002968"
## [1915] "N19.HOG0002093__N19.HOG0002092"
## [1916] "N19.HOG0013464__N19.HOG0014176"
## [1917] "N19.HOG0000014__N19.HOG0008998"
## [1918] "N19.HOG0005875__N19.HOG0007398"
## [1919] "N19.HOG0011690__N19.HOG0011690"
## [1920] "N19.HOG0011622__N19.HOG0011621__N19.HOG0005632__N19.HOG0005932__N19.HOG0016788__N19.HOG0000868__N19.HOG0014195__N19.HOG0010483"
## [1921] "N19.HOG0002085__N19.HOG0008757__N19.HOG0005633__N19.HOG0007057__N19.HOG0009762__N19.HOG0012921__N19.HOG0007967"
## [1922] "N19.HOG0005175__N19.HOG0003527"
## [1923] "N19.HOG0001173__N19.HOG0002669"
## [1924] "N19.HOG0007618__N19.HOG0007617__N19.HOG0011236__N19.HOG0005944__N19.HOG0005945"
## [1925] "N19.HOG0009134__N19.HOG0009135"
## [1926] "N19.HOG0009854__N19.HOG0010293__N19.HOG0005441"
## [1927] "N19.HOG0006411__N19.HOG0002385__N19.HOG0007412__N19.HOG0009531__N19.HOG0009328__N19.HOG0002086__N19.HOG0009329"
## [1928] "N19.HOG0011319__N19.HOG0011319__N19.HOG0011319__N19.HOG0011319"
## [1929] "N19.HOG0002397__N19.HOG0002400"
## [1930] "NA__N19.HOG0004654__N19.HOG0009556"
## [1931] "N19.HOG0012942__N19.HOG0012942"
## [1932] "N19.HOG0007789__N19.HOG0007788"
## [1933] "N19.HOG0002765__N19.HOG0002766__N19.HOG0007416"
## [1934] "N19.HOG0003571__N19.HOG0005419"
## [1935] "N19.HOG0007218__N19.HOG0014696__N19.HOG0014950"
## [1936] "N19.HOG0004060__N19.HOG0005285__N19.HOG0005286"
## [1937] "N19.HOG0002559__N19.HOG0008403"
## [1938] "N19.HOG0009130__N19.HOG0014240"
## [1939] "N19.HOG0004105__N19.HOG0006487"
## [1940] "N19.HOG0003895__N19.HOG0003891"
## [1941] "N19.HOG0011213__N19.HOG0015521"
## [1942] "N19.HOG0001560__N19.HOG0006516"
## [1943] "N19.HOG0001569__N19.HOG0001561"
## [1944] "NA__N19.HOG0015555__N19.HOG0016353"
## [1945] "NA__NA__Oki6"
## [1946] "N19.HOG0004773__NA__NA"
## [1947] "N19.HOG0011890__N19.HOG0001616"
## [1948] "N19.HOG0002261__N19.HOG0014988"
## [1949] "N19.HOG0001276__N19.HOG0016786"
## [1950] "N19.HOG0009107__N19.HOG0008857"
## [1951] "N19.HOG0006030__N19.HOG0008858"
## [1952] "N19.HOG0006815__N19.HOG0000260__N19.HOG0006030"
## [1953] "N19.HOG0011391__N19.HOG0004361__N19.HOG0014989"
## [1954] "N19.HOG0006510__N19.HOG0006511"
## [1955] "N19.HOG0000243__N19.HOG0003349__N19.HOG0003353__N19.HOG0003350__N19.HOG0003351"
## [1956] "N19.HOG0011393__N19.HOG0006408"
## [1957] "N19.HOG0001535__N19.HOG0001534"
## [1958] "N19.HOG0008176__N19.HOG0003193__N19.HOG0010028"
## [1959] "N19.HOG0001058__N19.HOG0001331"
## [1960] "N19.HOG0005451__N19.HOG0008166"
## [1961] "N19.HOG0007058__N19.HOG0007772__N19.HOG0013473"
## [1962] "N19.HOG0015050__N19.HOG0015049"
## [1963] "N19.HOG0004801__N19.HOG0006292__N19.HOG0004635__N19.HOG0007607__N19.HOG0003030"
## [1964] "N19.HOG0000011__N19.HOG0011686__N19.HOG0011686"
## [1965] "N19.HOG0004089__N19.HOG0003332"
## [1966] "N19.HOG0005751__N19.HOG0006291"
## [1967] "N19.HOG0000048__N19.HOG0017772__N19.HOG0017771"
## [1968] "N19.HOG0012528__N19.HOG0011747"
## [1969] "N19.HOG0003439__N19.HOG0000367__N19.HOG0002261"
## [1970] "N19.HOG0001264__N19.HOG0008219"
## [1971] "N19.HOG0014226__N19.HOG0006915__N19.HOG0006914"
## [1972] "N19.HOG0005555__NA__N19.HOG0003437"
## [1973] "N19.HOG0001254__N19.HOG0001254"
## [1974] "N19.HOG0007231__N19.HOG0016210"
## [1975] "N19.HOG0011308__N19.HOG0010468__N19.HOG0003630__N19.HOG0009516__N19.HOG0010469__N19.HOG0009314__N19.HOG0010836__N19.HOG0005260__N19.HOG0010651__N19.HOG0003075"
## [1976] "N19.HOG0013428__N19.HOG0007227__N19.HOG0012885"
## [1977] "N19.HOG0016269__N19.HOG0008213"
## [1978] "N19.HOG0006124__N19.HOG0006124"
## [1979] "N19.HOG0012023__N19.HOG0003105"
## [1980] "N19.HOG0009806__N19.HOG0007827"
## [1981] "N19.HOG0004232__N19.HOG0004504"
## [1982] "N19.HOG0014471__NA__N19.HOG0004844__N19.HOG0002940"
## [1983] "N19.HOG0005575__N19.HOG0006199__N19.HOG0006200__N19.HOG0013633__N19.HOG0006666__N19.HOG0009984__N19.HOG0015238"
## [1984] "N19.HOG0015041__N19.HOG0013472"
## [1985] "N19.HOG0006771__N19.HOG0006143"
## [1986] "N19.HOG0004628__N19.HOG0008631"
## [1987] "N19.HOG0014197__N19.HOG0009764"
## [1988] "N19.HOG0004305__N19.HOG0004306__N19.HOG0004307__N19.HOG0007539__N19.HOG0009539__N19.HOG0007510"
## [1989] "N19.HOG0003975__N19.HOG0014198"
## [1990] "N19.HOG0012551__N19.HOG0008407"
## [1991] "N19.HOG0008409__N19.HOG0007448"
## [1992] "N19.HOG0007622__N19.HOG0003215"
## [1993] "N19.HOG0008391__N19.HOG0006413__N19.HOG0012202"
## [1994] "N19.HOG0013479__N19.HOG0013479"
## [1995] "N19.HOG0014213__N19.HOG0015064"
## [1996] "N19.HOG0011911__N19.HOG0000982"
## [1997] "N19.HOG0001243__N19.HOG0007754"
## [1998] "N19.HOG0002212__N19.HOG0004534"
## [1999] "N19.HOG0017778__N19.HOG0015791"
## [2000] "NA__N19.HOG0001878"
## [2001] "N19.HOG0014421__N19.HOG0014421__N19.HOG0010702__N19.HOG0000180"
## [2002] "N19.HOG0008947__N19.HOG0011263__N19.HOG0013058__N19.HOG0015016__N19.HOG0002076"
## [2003] "N19.HOG0009110__N19.HOG0004709__N19.HOG0009924__N19.HOG0013451__N19.HOG0003055__N19.HOG0014157__N19.HOG0007403"
## [2004] "NA__N19.HOG0017779"
## [2005] "N19.HOG0007694__N19.HOG0008223__N19.HOG0000664__N19.HOG0014828__N19.HOG0004679"
## [2006] "N19.HOG0012918__N19.HOG0012919"
## [2007] "N19.HOG0008642__N19.HOG0005841__N19.HOG0005842"
## [2008] "N19.HOG0002647__N19.HOG0001243"
## [2009] "N19.HOG0000737__N19.HOG0003969"
## [2010] "N19.HOG0003615__N19.HOG0013059"
## [2011] "N19.HOG0008645__N19.HOG0006417__N19.HOG0016898"
## [2012] "N19.HOG0008360__N19.HOG0000915__N19.HOG0006755__N19.HOG0006754__N19.HOG0009315"
## [2013] "N19.HOG0011390__N19.HOG0005540__N19.HOG0008855__N19.HOG0003216__N19.HOG0008856__N19.HOG0004627"
## [2014] "N19.HOG0012886__N19.HOG0003612"
## [2015] "N19.HOG0006406__N19.HOG0006405"
## [2016] "N19.HOG0006996__N19.HOG0013454__N19.HOG0002884__N19.HOG0012905"
## [2017] "N19.HOG0008374__N19.HOG0009225"
## [2018] "N19.HOG0009528__N19.HOG0009224"
## [2019] "N19.HOG0004779__N19.HOG0005326"
## [2020] "N19.HOG0012636__N19.HOG0016270"
## [2021] "N19.HOG0011227__N19.HOG0003405__N19.HOG0003403__N19.HOG0003438__N19.HOG0002514__N19.HOG0015071__N19.HOG0001957__N19.HOG0000775__N19.HOG0005752"
## [2022] "N19.HOG0011219__N19.HOG0016220"
## [2023] "N19.HOG0010967__N19.HOG0010967__N19.HOG0004834"
## [2024] "N19.HOG0008167__NA"
## [2025] "N19.HOG0014721__N19.HOG0014475"
## [2026] "N19.HOG0001975__N19.HOG0013447"
## [2027] "N19.HOG0014155__N19.HOG0011398"
## [2028] "N19.HOG0011398__N19.HOG0017783__N19.HOG0014235"
## [2029] "N19.HOG0004100__N19.HOG0004085__N19.HOG0007615"
## [2030] "N19.HOG0009548__N19.HOG0001290"
## [2031] "N19.HOG0007981__N19.HOG0008887__N19.HOG0008399__N19.HOG0008398__N19.HOG0006526__N19.HOG0001642"
## [2032] "N19.HOG0005101__N19.HOG0008628__N19.HOG0007593__N19.HOG0006520__N19.HOG0008872__N19.HOG0011738__N19.HOG0007771__N19.HOG0006639__N19.HOG0002739"
## [2033] "N19.HOG0005685__N19.HOG0005685"
## [2034] "N19.HOG0016228__N19.HOG0006780"
## [2035] "N19.HOG0007439__N19.HOG0012938"
## [2036] "N19.HOG0001273__N19.HOG0001272__N19.HOG0011416__N19.HOG0009343__N19.HOG0012203__N19.HOG0003915__N19.HOG0006908"
## [2037] "N19.HOG0002446__N19.HOG0002446__N19.HOG0015787"
## [2038] "N19.HOG0014207__N19.HOG0001834__N19.HOG0001834"
## [2039] "N19.HOG0008387__N19.HOG0007721"
## [2040] "N19.HOG0001723__N19.HOG0004761"
## [2041] "N19.HOG0009342__N19.HOG0002284"
## [2042] "N19.HOG0016896__N19.HOG0009014"
## [2043] "N19.HOG0007778__N19.HOG0007778"
## [2044] "N19.HOG0015053__N19.HOG0014204"
## [2045] "N19.HOG0004758__NA"
## [2046] "N19.HOG0011641__N19.HOG0004782"
## [2047] "N19.HOG0009851__N19.HOG0008380__N19.HOG0008164__N19.HOG0008874__N19.HOG0017981"
## [2048] "N19.HOG0005553__N19.HOG0011218"
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## [2050] "N19.HOG0017983__N19.HOG0016224"
## [2051] "N19.HOG0006252__N19.HOG0007252"
## [2052] "N19.HOG0000032__N19.HOG0009945"
## [2053] "NA__N19.HOG0005438__N19.HOG0008404__N19.HOG0015089__N19.HOG0013498__N19.HOG0009354__N19.HOG0012220"
## [2054] "N19.HOG0011074__N19.HOG0004580__N19.HOG0001672"
## [2055] "N19.HOG0002893__N19.HOG0002745__N19.HOG0007487__N19.HOG0009947__N19.HOG0009553__N19.HOG0010491"
## [2056] "N19.HOG0003206__N19.HOG0017984"
## [2057] "N19.HOG0010131__N19.HOG0010131"
## [2058] "N19.HOG0012530__N19.HOG0012530"
## [2059] "N19.HOG0017985__N19.HOG0005362__N19.HOG0003854__N19.HOG0008396"
## [2060] "N19.HOG0007978__N19.HOG0011228__N19.HOG0017986__N19.HOG0015803"
## [2061] "N19.HOG0012935__N19.HOG0007977__N19.HOG0008881__N19.HOG0006296__N19.HOG0006171"
## [2062] "N19.HOG0013729__N19.HOG0006340"
## [2063] "N19.HOG0012012__NA"
## [2064] "N19.HOG0012943__N19.HOG0001660"
## [2065] "N19.HOG0008891__N19.HOG0010494__N19.HOG0014246"
## [2066] "N19.HOG0011637__N19.HOG0006416"
## [2067] "N19.HOG0013501__N19.HOG0006919__N19.HOG0003922"
## [2068] "N19.HOG0015820__N19.HOG0009139"
## [2069] "N19.HOG0008651__N19.HOG0011921__N19.HOG0005179__N19.HOG0015107__N19.HOG0004791__N19.HOG0003683"
## [2070] "N19.HOG0010688__N19.HOG0015495__N19.HOG0001352__N19.HOG0011153"
## [2071] "N19.HOG0013487__N19.HOG0008606__N19.HOG0000581"
## [2072] "N19.HOG0004304__N19.HOG0008883__N19.HOG0008883"
## [2073] "N19.HOG0014229__N19.HOG0007251__N19.HOG0006356"
## [2074] "N19.HOG0009547__N19.HOG0012721"
## [2075] "N19.HOG0010137__N19.HOG0010138"
## [2076] "N19.HOG0015077__N19.HOG0016229"
## [2077] "N19.HOG0013486__N19.HOG0015799"
## [2078] "N19.HOG0000716__N19.HOG0009767__N19.HOG0015076__N19.HOG0012098"
## [2079] "N19.HOG0007980__N19.HOG0005584__N19.HOG0005592__N19.HOG0007610__N19.HOG0013485__N19.HOG0007177__N19.HOG0001023__N19.HOG0016971__N19.HOG0003856__N19.HOG0006173"
## [2080] "N19.HOG0010856__N19.HOG0010855"
## [2081] "N19.HOG0012213__N19.HOG0012213__N19.HOG0014742"
## [2082] "N19.HOG0004261__N19.HOG0015075"
## [2083] "N19.HOG0006363__N19.HOG0010135"
## [2084] "N19.HOG0008269__N19.HOG0005696"
## [2085] "N19.HOG0008981__N19.HOG0010199__N19.HOG0002888"
## [2086] "N19.HOG0008257__N19.HOG0010488"
## [2087] "N19.HOG0009545__N19.HOG0010134"
## [2088] "N19.HOG0004061__N19.HOG0016520__N19.HOG0017988"
## [2089] "N19.HOG0000387__N19.HOG0014228"
## [2090] "N19.HOG0012537__N19.HOG0008882__N19.HOG0007979"
## [2091] "N19.HOG0015073__N19.HOG0009128__N19.HOG0009129__N19.HOG0001653__N19.HOG0003476"
## [2092] "N19.HOG0005834__N19.HOG0012535__N19.HOG0010570__N19.HOG0010918__N19.HOG0006916"
## [2093] "N19.HOG0005281__N19.HOG0008397__N19.HOG0007608__N19.HOG0007609__N19.HOG0002424"
## [2094] "N19.HOG0013463__N19.HOG0003875__N19.HOG0003876__N19.HOG0011617"
## [2095] "N19.HOG0007235__N19.HOG0010582"
## [2096] "N19.HOG0009536__N19.HOG0009537__N19.HOG0014185"
## [2097] "N19.HOG0009117__N19.HOG0009118__NA__N19.HOG0015040"
## [2098] "N19.HOG0012915__N19.HOG0012914"
## [2099] "N19.HOG0009339__N19.HOG0007962__N19.HOG0005732__N19.HOG0004784__N19.HOG0011221"
## [2100] "N19.HOG0005743__N19.HOG0005742__N19.HOG0008875__N19.HOG0008875"
## [2101] "N19.HOG0014307__N19.HOG0001037__N19.HOG0001037__N19.HOG0004832"
## [2102] "N19.HOG0006354__N19.HOG0006353__N19.HOG0018049__N19.HOG0012256"
## [2103] "N19.HOG0018053__N19.HOG0018052__N19.HOG0018051__N19.HOG0016901__N19.HOG0018050__N19.HOG0013587"
## [2104] "N19.HOG0016900__N19.HOG0009098"
## [2105] "N19.HOG0007955__N19.HOG0008379__N19.HOG0010393__N19.HOG0004248"
## [2106] "N19.HOG0008870__N19.HOG0001270__N19.HOG0008749__N19.HOG0009115__N19.HOG0005201__N19.HOG0002479"
## [2107] "N19.HOG0015364__N19.HOG0008489__N19.HOG0002025"
## [2108] "N19.HOG0007687__N19.HOG0014179__N19.HOG0002762"
## [2109] "N19.HOG0006038__N19.HOG0006037__N19.HOG0010661__N19.HOG0010226"
## [2110] "N19.HOG0001107__N19.HOG0012908"
## [2111] "NA__N19.HOG0001096"
## [2112] "N19.HOG0013725__N19.HOG0015032"
## [2113] "N19.HOG0007239__N19.HOG0008869__N19.HOG0005268"
## [2114] "N19.HOG0016972__N19.HOG0012509__N19.HOG0006770"
## [2115] "N19.HOG0009533__N19.HOG0012508__N19.HOG0010297"
## [2116] "N19.HOG0011315__N19.HOG0007056__N19.HOG0007238"
## [2117] "N19.HOG0014260__N19.HOG0014260"
## [2118] "N19.HOG0000501__N19.HOG0002611"
## [2119] "N19.HOG0008498__N19.HOG0016309"
## [2120] "N19.HOG0003565__N19.HOG0015103"
## [2121] "N19.HOG0011370__N19.HOG0005827"
## [2122] "N19.HOG0011888__N19.HOG0011888"
## [2123] "N19.HOG0005933__N19.HOG0014658"
## [2124] "N19.HOG0005946__N19.HOG0002774"
## [2125] "N19.HOG0015099__N19.HOG0000955__N19.HOG0003792"
## [2126] "N19.HOG0007743__N19.HOG0002352"
## [2127] "N19.HOG0014720__N19.HOG0005642__N19.HOG0009939"
## [2128] "N19.HOG0004717__N19.HOG0009544__N19.HOG0008639__N19.HOG0007783__N19.HOG0007783__N19.HOG0001022"
## [2129] "N19.HOG0002607__N19.HOG0002614"
## [2130] "N19.HOG0009335__N19.HOG0016209__N19.HOG0003646__N19.HOG0014171__N19.HOG0003060__N19.HOG0007953__N19.HOG0013461__N19.HOG0007424__N19.HOG0004710"
## [2131] "N19.HOG0006172__N19.HOG0012534__N19.HOG0008641__N19.HOG0007422"
## [2132] "N19.HOG0009523__N19.HOG0016069__N19.HOG0005262__N19.HOG0011405__N19.HOG0016973"
## [2133] "N19.HOG0002109__N19.HOG0002110"
## [2134] "N19.HOG0003059__N19.HOG0002377"
## [2135] "N19.HOG0003221__N19.HOG0008889__N19.HOG0009768__N19.HOG0003401"
## [2136] "N19.HOG0013497__N19.HOG0012219__N19.HOG0014241__N19.HOG0004265"
## [2137] "N19.HOG0007045__N19.HOG0005843__N19.HOG0004140__N19.HOG0009358"
## [2138] "N19.HOG0005204__N19.HOG0005205"
## [2139] "N19.HOG0010398__N19.HOG0006573"
## [2140] "N19.HOG0004096__N19.HOG0008157"
## [2141] "N19.HOG0007697__N19.HOG0007697"
## [2142] "N19.HOG0008363__N19.HOG0002370__N19.HOG0008862__N19.HOG0004048__N19.HOG0005437__N19.HOG0009864__N19.HOG0007763__N19.HOG0008620__N19.HOG0005412"
## [2143] "N19.HOG0015136__N19.HOG0000097"
## [2144] "N19.HOG0014982__N19.HOG0000889"
## [2145] "N19.HOG0004214__N19.HOG0010029"
## [2146] "N19.HOG0005736__N19.HOG0005735"
## [2147] "N19.HOG0007414__NA"
## [2148] "N19.HOG0000909__N19.HOG0012223__N19.HOG0012223__N19.HOG0012956"
## [2149] "N19.HOG0001542__N19.HOG0005339"
## [2150] "N19.HOG0011916__N19.HOG0016975"
## [2151] "N19.HOG0012946__N19.HOG0001028__N19.HOG0006921"
## [2152] "N19.HOG0002666__N19.HOG0009769__N19.HOG0005211__N19.HOG0002890__N19.HOG0015095__N19.HOG0012546"
## [2153] "N19.HOG0007787__N19.HOG0001935"
## [2154] "N19.HOG0005882__N19.HOG0005882"
## [2155] "N19.HOG0006723__N19.HOG0008405"
## [2156] "N19.HOG0001056__NA__N19.HOG0014467"
## [2157] "N19.HOG0002023__N19.HOG0010527"
## [2158] "N19.HOG0002341__N19.HOG0008948__N19.HOG0011689"
## [2159] "N19.HOG0005634__N19.HOG0010228__N19.HOG0004455__N19.HOG0002707__N19.HOG0007831"
## [2160] "N19.HOG0006613__N19.HOG0007428"
## [2161] "N19.HOG0003925__N19.HOG0003925"
## [2162] "N19.HOG0012547__N19.HOG0010374__NA__N19.HOG0007444__N19.HOG0014254__N19.HOG0010310__N19.HOG0010310"
## [2163] "N19.HOG0002047__N19.HOG0002048"
## [2164] "N19.HOG0002939__N19.HOG0009949"
## [2165] "N19.HOG0011237__N19.HOG0011077__N19.HOG0009357"
## [2166] "N19.HOG0012948__N19.HOG0004630"
## [2167] "N19.HOG0012949__N19.HOG0003068__N19.HOG0003067"
## [2168] "N19.HOG0007443__N19.HOG0002304"
## [2169] "N19.HOG0003524__N19.HOG0003524__N19.HOG0002403__N19.HOG0015772"
## [2170] "N19.HOG0004862__N19.HOG0016783"
## [2171] "N19.HOG0000175__N19.HOG0014255"
## [2172] "N19.HOG0006571__N19.HOG0000222"
## [2173] "N19.HOG0015101__N19.HOG0000379"
## [2174] "N19.HOG0014162__N19.HOG0014161"
## [2175] "N19.HOG0009756__NA"
## [2176] "N19.HOG0002135__N19.HOG0002590__N19.HOG0000403"
## [2177] "N19.HOG0006515__N19.HOG0005061__N19.HOG0005177"
## [2178] "N19.HOG0009327__N19.HOG0008159__N19.HOG0001269__N19.HOG0009530__N19.HOG0010295__N19.HOG0007411"
## [2179] "N19.HOG0008630__N19.HOG0000037"
## [2180] "N19.HOG0007427__N19.HOG0006522"
## [2181] "N19.HOG0008382__N19.HOG0014193"
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## [2183] "N19.HOG0017999__N19.HOG0014194"
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## [2185] "N19.HOG0018000__N19.HOG0013510"
## [2186] "N19.HOG0012351__N19.HOG0015548"
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## [2188] "N19.HOG0003670__N19.HOG0003669"
## [2189] "N19.HOG0005171__N19.HOG0012521__N19.HOG0003239"
## [2190] "N19.HOG0013637__N19.HOG0011110__N19.HOG0015243__N19.HOG0007478__N19.HOG0004649"
## [2191] "N19.HOG0009517__N19.HOG0009518"
## [2192] "N19.HOG0000817__N19.HOG0007966"
## [2193] "N19.HOG0000063__N19.HOG0015385__N19.HOG0012640"
## [2194] "N19.HOG0008071__N19.HOG0002835__N19.HOG0010309__N19.HOG0012945__N19.HOG0004569"
## [2195] "N19.HOG0008178__N19.HOG0015094"
## [2196] "N19.HOG0009761__N19.HOG0007956__N19.HOG0007957"
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## [2200] "N19.HOG0012195__N19.HOG0010115__N19.HOG0003373"
## [2201] "N19.HOG0006906__N19.HOG0005976"
## [2202] "N19.HOG0014762__N19.HOG0014762__N19.HOG0011551__N19.HOG0017017__N19.HOG0015544"
## [2203] "N19.HOG0008388__N19.HOG0008634"
## [2204] "N19.HOG0016976__N19.HOG0005745__N19.HOG0008267"
## [2205] "N19.HOG0005936__N19.HOG0006285__N19.HOG0010025__N19.HOG0010031"
## [2206] "N19.HOG0011899__N19.HOG0003182__N19.HOG0003183"
## [2207] "N19.HOG0011765__N19.HOG0011765"
## [2208] "N19.HOG0018002__N19.HOG0003790"
## [2209] "N19.HOG0003990__N19.HOG0011056__N19.HOG0008369__N19.HOG0018187__N19.HOG0008368__N19.HOG0006034"
## [2210] "N19.HOG0009326__N19.HOG0007768"
## [2211] "N19.HOG0003325__N19.HOG0005208"
## [2212] "N19.HOG0006704__N19.HOG0006706"
## [2213] "N19.HOG0014050__N19.HOG0015769"
## [2214] "N19.HOG0015246__N19.HOG0006287"
## [2215] "N19.HOG0003048__NA__N19.HOG0014132"
## [2216] "N19.HOG0008647__N19.HOG0002416"
## [2217] "N19.HOG0007833__N19.HOG0005866__N19.HOG0013792__N19.HOG0013061"
## [2218] "N19.HOG0014482__N19.HOG0014577__N19.HOG0009175"
## [2219] "N19.HOG0012286__N19.HOG0012285"
## [2220] "N19.HOG0013185__N19.HOG0005778"
## [2221] "N19.HOG0006958__N19.HOG0007078__N19.HOG0007079__N19.HOG0007828"
## [2222] "N19.HOG0005475__N19.HOG0013636"
## [2223] "N19.HOG0001942__N19.HOG0008699__N19.HOG0008450"
## [2224] "N19.HOG0014465__N19.HOG0010526__N19.HOG0008018__N19.HOG0002083"
## [2225] "N19.HOG0009597__N19.HOG0010466"
## [2226] "N19.HOG0007888__N19.HOG0002397__N19.HOG0002400__N19.HOG0002400"
## [2227] "N19.HOG0007654__N19.HOG0008449"
## [2228] "N19.HOG0007315__N19.HOG0009805"
## [2229] "N19.HOG0010178__N19.HOG0008216__N19.HOG0004422__N19.HOG0013630__N19.HOG0007825"
## [2230] "N19.HOG0014462__N19.HOG0000807__N19.HOG0006198__N19.HOG0006332__N19.HOG0001453"
## [2231] "N19.HOG0002259__N19.HOG0002259"
## [2232] "N19.HOG0006820__N19.HOG0006819"
## [2233] "N19.HOG0000275__N19.HOG0009320"
## [2234] "N19.HOG0006369__N19.HOG0001864"
## [2235] "N19.HOG0010972__N19.HOG0010971"
## [2236] "N19.HOG0007175__N19.HOG0006368"
## [2237] "N19.HOG0003662__N19.HOG0003661__N19.HOG0005435"
## [2238] "N19.HOG0002703__NA__N19.HOG0011869__N19.HOG0004701__N19.HOG0008153__N19.HOG0008153__N19.HOG0006756__N19.HOG0001024"
## [2239] "N19.HOG0011514__NA"
## [2240] "NA__N19.HOG0005077"
## [2241] "N19.HOG0003662__NA"
## [2242] "N19.HOG0002703__NA__N19.HOG0004701__N19.HOG0008153__N19.HOG0006756__N19.HOG0001024"
## [2243] "N19.HOG0013430__N19.HOG0005431"
## [2244] "N19.HOG0003266__N19.HOG0002846"
## [2245] "N19.HOG0004357__N19.HOG0017520"
## [2246] "N19.HOG0005829__N19.HOG0008384"
## [2247] "N19.HOG0003018__N19.HOG0007061"
## [2248] "N19.HOG0012926__N19.HOG0007431__N19.HOG0009540__N19.HOG0010119"
## [2249] "N19.HOG0018004__N19.HOG0007053"
## [2250] "N19.HOG0011838__N19.HOG0006555"
## [2251] "N19.HOG0008217__N19.HOG0006328__N19.HOG0006329__N19.HOG0006772"
## [2252] "N19.HOG0008019__N19.HOG0001462__N19.HOG0008942__N19.HOG0008218"
## [2253] "N19.HOG0005316__N19.HOG0007259"
## [2254] "N19.HOG0005927__N19.HOG0012487"
## [2255] "N19.HOG0004703__N19.HOG0007970"
## [2256] "N19.HOG0004403__N19.HOG0003938__N19.HOG0006463"
## [2257] "N19.HOG0014136__N19.HOG0008154__N19.HOG0005541__N19.HOG0005542__N19.HOG0011215__N19.HOG0009522"
## [2258] "N19.HOG0009921__N19.HOG0009109__N19.HOG0005977"
## [2259] "N19.HOG0000920__N19.HOG0000921"
## [2260] "N19.HOG0013201__N19.HOG0017038__N19.HOG0011551"
## [2261] "N19.HOG0003839__N19.HOG0004463__N19.HOG0001473"
## [2262] "N19.HOG0006043__N19.HOG0010403__N19.HOG0010128__N19.HOG0006169__N19.HOG0004556"
## [2263] "N19.HOG0007248__N19.HOG0015793__N19.HOG0014217__N19.HOG0006044"
## [2264] "N19.HOG0007781__N19.HOG0008880__N19.HOG0008172__N19.HOG0009348__N19.HOG0014216__N19.HOG0008394__N19.HOG0001903__N19.HOG0006647"
## [2265] "N19.HOG0007974__N19.HOG0006300"
## [2266] "N19.HOG0011628__N19.HOG0010127__N19.HOG0012210__N19.HOG0010027"
## [2267] "N19.HOG0010738__N19.HOG0010739"
## [2268] "N19.HOG0009599__N19.HOG0007052__N19.HOG0014478__N19.HOG0007300__N19.HOG0006960__N19.HOG0006960__N19.HOG0007711__N19.HOG0008701__N19.HOG0008224"
## [2269] "N19.HOG0017039__N19.HOG0002379__NA__N19.HOG0002381"
## [2270] "N19.HOG0013188__N19.HOG0009173__N19.HOG0010531"
## [2271] "N19.HOG0011421__N19.HOG0011419__N19.HOG0007445__N19.HOG0010684"
## [2272] "N19.HOG0012951__N19.HOG0008648"
## [2273] "N19.HOG0011264__N19.HOG0013187"
## [2274] "N19.HOG0008371__N19.HOG0003823"
## [2275] "N19.HOG0003752__NA"
## [2276] "N19.HOG0015788__N19.HOG0003308"
## [2277] "N19.HOG0007055__N19.HOG0009532__N19.HOG0009532__N19.HOG0005551"
## [2278] "N19.HOG0009324__N19.HOG0012904"
## [2279] "N19.HOG0003888__N19.HOG0009323"
## [2280] "N19.HOG0004373__N19.HOG0007054"
## [2281] "N19.HOG0010660__N19.HOG0010479__N19.HOG0010478__N19.HOG0004253__N19.HOG0006638"
## [2282] "N19.HOG0008624__N19.HOG0007421"
## [2283] "N19.HOG0014711__N19.HOG0003671"
## [2284] "N19.HOG0010723__N19.HOG0012188"
## [2285] "N19.HOG0009330__N19.HOG0008626__N19.HOG0007587__N19.HOG0007952__N19.HOG0011240"
## [2286] "N19.HOG0005929__N19.HOG0008160"
## [2287] "N19.HOG0004698__N19.HOG0015256"
## [2288] "N19.HOG0004838__N19.HOG0007440"
## [2289] "N19.HOG0013493__N19.HOG0004103"
## [2290] "N19.HOG0010345__N19.HOG0005129__N19.HOG0005129"
## [2291] "N19.HOG0010536__N19.HOG0011265__N19.HOG0009601__N19.HOG0007688"
## [2292] "N19.HOG0001110__N19.HOG0003570"
## [2293] "N19.HOG0002561__N19.HOG0009600__N19.HOG0008229"
## [2294] "N19.HOG0005128__N19.HOG0011111__N19.HOG0007591__N19.HOG0007592__N19.HOG0002314__N19.HOG0005930"
## [2295] "N19.HOG0004486__N19.HOG0012189"
## [2296] "N19.HOG0007657__N19.HOG0010528__N19.HOG0008700__N19.HOG0007923__N19.HOG0008944"
## [2297] "N19.HOG0008222__N19.HOG0010235"
## [2298] "N19.HOG0006898__N19.HOG0006898__N19.HOG0000992"
## [2299] "N19.HOG0013188__N19.HOG0009173"
## [2300] "N19.HOG0009599__N19.HOG0007052__N19.HOG0014478__N19.HOG0007300"
## [2301] "N19.HOG0006960__N19.HOG0007711__N19.HOG0008701__N19.HOG0008224"
## [2302] "NA__N19.HOG0006960__N19.HOG0001268__N19.HOG0008701__N19.HOG0008224__N19.HOG0008224"
## [2303] "N19.HOG0010738__N19.HOG0010739"
## [2304] "N19.HOG0018190__NA"
## [2305] "N19.HOG0003655__N19.HOG0003655"
## [2306] "N19.HOG0000742__N19.HOG0000744__N19.HOG0007741"
## [2307] "N19.HOG0006412__N19.HOG0005512"
## [2308] "NA__N19.HOG0009256__N19.HOG0000074"
## [2309] "N19.HOG0005840__N19.HOG0009290"
## [2310] "N19.HOG0006768__N19.HOG0010704__N19.HOG0018015__N19.HOG0013431"
## [2311] "N19.HOG0012211__N19.HOG0005333"
## [2312] "N19.HOG0012392__NA__N19.HOG0010484__N19.HOG0014220__N19.HOG0005678"
## [2313] "N19.HOG0003428__N19.HOG0002355"
## [2314] "N19.HOG0012175__N19.HOG0005071__N19.HOG0005105__N19.HOG0004150__N19.HOG0009439__N19.HOG0001624"
## [2315] "N19.HOG0010486__N19.HOG0014222"
## [2316] "N19.HOG0014762__N19.HOG0011551"
## [2317] "N19.HOG0018118__N19.HOG0018119"
## [2318] "N19.HOG0011901__N19.HOG0011901__N19.HOG0010854__N19.HOG0009765__N19.HOG0009853__N19.HOG0008877__N19.HOG0009937"
## [2319] "N19.HOG0009543__N19.HOG0009346__N19.HOG0010674"
## [2320] "NA__N19.HOG0005279"
## [2321] "N19.HOG0006136__N19.HOG0016216__N19.HOG0018012__N19.HOG0009766"
## [2322] "N19.HOG0007696__N19.HOG0007697"
## [2323] "N19.HOG0010116__N19.HOG0011025__NA"
## [2324] "N19.HOG0016668__N19.HOG0000369"
## [2325] "N19.HOG0018193__N19.HOG0018193"
## [2326] "N19.HOG0007247__N19.HOG0003145__N19.HOG0004489__N19.HOG0008170__N19.HOG0009123"
## [2327] "N19.HOG0006414__N19.HOG0012526__N19.HOG0009122"
## [2328] "N19.HOG0012209__N19.HOG0005748"
## [2329] "N19.HOG0007973__N19.HOG0005904"
## [2330] "N19.HOG0008878__N19.HOG0008879__N19.HOG0003133__N19.HOG0010932__N19.HOG0009938"
## [2331] "N19.HOG0002869__N19.HOG0010408__N19.HOG0015065"
## [2332] "N19.HOG0008638__N19.HOG0010304__N19.HOG0000041"
## [2333] "N19.HOG0005029__N19.HOG0008393__N19.HOG0003136__N19.HOG0001722__N19.HOG0003945__N19.HOG0007601__N19.HOG0005747"
## [2334] "N19.HOG0017928__N19.HOG0000643"
## [2335] "N19.HOG0013812__N19.HOG0017929"
## [2336] "N19.HOG0017930__N19.HOG0013812__N19.HOG0013812"
## [2337] "N19.HOG0000813__N19.HOG0004578__N19.HOG0006980"
## [2338] "N19.HOG0007436__N19.HOG0007435__N19.HOG0006777__N19.HOG0003253__N19.HOG0000318__N19.HOG0014214"
## [2339] "N19.HOG0018190__N19.HOG0004530"
## [2340] "N19.HOG0015816__N19.HOG0002344"
## [2341] "N19.HOG0008180__N19.HOG0008650"
## [2342] "N19.HOG0006925__N19.HOG0005287"
## [2343] "N19.HOG0009138__N19.HOG0000266"
## [2344] "N19.HOG0006690__N19.HOG0005753"
## [2345] "N19.HOG0006537__NA"
## [2346] "N19.HOG0013509__N19.HOG0013509"
## [2347] "N19.HOG0002171__N19.HOG0013507"
## [2348] "N19.HOG0008406__N19.HOG0018017"
## [2349] "N19.HOG0003470__N19.HOG0013753"
## [2350] "N19.HOG0018019__N19.HOG0018018__N19.HOG0001664__N19.HOG0015068"
## [2351] "N19.HOG0009934__N19.HOG0003998__N19.HOG0009447__N19.HOG0014738"
## [2352] "N19.HOG0007835__N19.HOG0015254"
## [2353] "N19.HOG0001208__N19.HOG0001535"
## [2354] "N19.HOG0018021__N19.HOG0013488__N19.HOG0014960__N19.HOG0016523"
## [2355] "N19.HOG0007195__N19.HOG0007196"
## [2356] "N19.HOG0003434__N19.HOG0009926__N19.HOG0003439"
## [2357] "N19.HOG0007230__N19.HOG0002705__N19.HOG0007410"
## [2358] "N19.HOG0009755__N19.HOG0004776__N19.HOG0007408__N19.HOG0008057__N19.HOG0015018"
## [2359] "N19.HOG0006714__N19.HOG0016981__N19.HOG0003449__N19.HOG0000718"
## [2360] "N19.HOG0006279__N19.HOG0012899"
## [2361] "N19.HOG0009114__N19.HOG0000523"
## [2362] "N19.HOG0009113__N19.HOG0008623"
## [2363] "N19.HOG0013797__N19.HOG0013797"
## [2364] "N19.HOG0004907__N19.HOG0018022"
## [2365] "N19.HOG0006278__N19.HOG0014723__N19.HOG0005447__N19.HOG0007406"
## [2366] "N19.HOG0016318__N19.HOG0016318__N19.HOG0008372__N19.HOG0008370__N19.HOG0006410__N19.HOG0012186"
## [2367] "N19.HOG0012540__N19.HOG0012540"
## [2368] "N19.HOG0001311__N19.HOG0002580"
## [2369] "N19.HOG0002898__N19.HOG0016982__N19.HOG0003152"
## [2370] "N19.HOG0008389__N19.HOG0008390__N19.HOG0009936__N19.HOG0007972__N19.HOG0005445__N19.HOG0010302__N19.HOG0008637__N19.HOG0004788"
## [2371] "N19.HOG0010673__N19.HOG0002307"
## [2372] "N19.HOG0003062__N19.HOG0004577"
## [2373] "N19.HOG0009345__N19.HOG0015062__N19.HOG0008169__N19.HOG0000816__N19.HOG0010126__N19.HOG0007434__N19.HOG0007064__N19.HOG0007065__N19.HOG0009434"
## [2374] "NA__N19.HOG0005271"
## [2375] "N19.HOG0018025__N19.HOG0011420__N19.HOG0013478"
## [2376] "N19.HOG0011417__N19.HOG0011417__N19.HOG0012930__N19.HOG0015057"
## [2377] "N19.HOG0016253__N19.HOG0002141"
## [2378] "N19.HOG0013201__N19.HOG0017038__N19.HOG0011551__N19.HOG0017037"
## [2379] "N19.HOG0017037__N19.HOG0017036"
## [2380] "N19.HOG0002834__N19.HOG0002834"
## [2381] "N19.HOG0016983__N19.HOG0001018"
## [2382] "N19.HOG0009931__NA__N19.HOG0009930"
## [2383] "N19.HOG0014202__N19.HOG0004849"
## [2384] "N19.HOG0010300__N19.HOG0009541"
## [2385] "N19.HOG0016319__N19.HOG0009132__N19.HOG0003761__N19.HOG0005820__N19.HOG0006201"
## [2386] "N19.HOG0004773__NA__NA"
## [2387] "NA__N19.HOG0015555__NA"
## [2388] "N19.HOG0003893__N19.HOG0014978"
## [2389] "N19.HOG0003893__N19.HOG0003893"
## [2390] "N19.HOG0012175__N19.HOG0007042"
## [2391] "N19.HOG0014131__N19.HOG0007575__N19.HOG0007576"
## [2392] "N19.HOG0009313__N19.HOG0008854__N19.HOG0016212"
## [2393] "N19.HOG0015749__N19.HOG0002569"
## [2394] "N19.HOG0002136__NA"
## [2395] "N19.HOG0012486__N19.HOG0000418__N19.HOG0000417"
## [2396] "N19.HOG0006513__N19.HOG0006514__N19.HOG0004344"
## [2397] "N19.HOG0009318__N19.HOG0006512__N19.HOG0006407"
## [2398] "N19.HOG0009108__N19.HOG0011607__N19.HOG0011607"
## [2399] "N19.HOG0008617__N19.HOG0014994__N19.HOG0014993__N19.HOG0005925"
## [2400] "N19.HOG0014992__N19.HOG0009317__N19.HOG0007759"
## [2401] "N19.HOG0003697__N19.HOG0011046__N19.HOG0005192"
## [2402] "N19.HOG0010761__N19.HOG0012890"
## [2403] "N19.HOG0010837__N19.HOG0011307"
## [2404] "N19.HOG0008361__N19.HOG0007948"
## [2405] "N19.HOG0001972__N19.HOG0009332"
## [2406] "NA__N19.HOG0008401"
## [2407] "N19.HOG0014133__N19.HOG0007399__N19.HOG0007228"
## [2408] "N19.HOG0014984__N19.HOG0008615__N19.HOG0016320"
## [2409] "N19.HOG0017837__N19.HOG0001197"
## [2410] "N19.HOG0008162__N19.HOG0012902"
## [2411] "N19.HOG0010848__N19.HOG0008163"
## [2412] "N19.HOG0003362__N19.HOG0006764"
## [2413] "N19.HOG0005700__N19.HOG0008893__N19.HOG0002197__N19.HOG0009948__N19.HOG0015097__N19.HOG0008892__N19.HOG0011912__N19.HOG0007988"
## [2414] "N19.HOG0003358__N19.HOG0005441"
## [2415] "N19.HOG0001758__N19.HOG0015509"
## [2416] "N19.HOG0007344__N19.HOG0011519"
## [2417] "N19.HOG0008030__N19.HOG0004262__N19.HOG0008027__N19.HOG0008508"
## [2418] "N19.HOG0005674__N19.HOG0009183"
## [2419] "N19.HOG0018152__N19.HOG0011137__N19.HOG0010814"
## [2420] "N19.HOG0005361__N19.HOG0002354__N19.HOG0009638__N19.HOG0000912"
## [2421] "N19.HOG0015556__N19.HOG0011722"
## [2422] "N19.HOG0008272__N19.HOG0009220__N19.HOG0010912__N19.HOG0009829"
## [2423] "N19.HOG0012445__N19.HOG0013728"
## [2424] "N19.HOG0002336__N19.HOG0004545__N19.HOG0008712"
## [2425] "N19.HOG0015418__N19.HOG0006829__N19.HOG0006828__N19.HOG0008457__N19.HOG0005030__N19.HOG0003726__N19.HOG0011125"
## [2426] "N19.HOG0008714__N19.HOG0006952__N19.HOG0007603"
## [2427] "N19.HOG0004169__N19.HOG0009005"
## [2428] "N19.HOG0005915__N19.HOG0005741__N19.HOG0009410"
## [2429] "N19.HOG0009995__N19.HOG0009817__N19.HOG0007250"
## [2430] "N19.HOG0011877__N19.HOG0011877__N19.HOG0013029"
## [2431] "N19.HOG0007505__N19.HOG0007506"
## [2432] "N19.HOG0002420__N19.HOG0013132__N19.HOG0013133"
## [2433] "N19.HOG0005774__N19.HOG0018156"
## [2434] "N19.HOG0008434__N19.HOG0011759__N19.HOG0009797__N19.HOG0012625"
## [2435] "N19.HOG0001189__N19.HOG0013247"
## [2436] "N19.HOG0018198__N19.HOG0005481"
## [2437] "N19.HOG0014594__N19.HOG0001749"
## [2438] "N19.HOG0013123__N19.HOG0013123"
## [2439] "N19.HOG0000090__N19.HOG0001274"
## [2440] "N19.HOG0008770__N19.HOG0009460__N19.HOG0016686"
## [2441] "N19.HOG0016099__N19.HOG0002472__N19.HOG0006109__N19.HOG0008767__N19.HOG0008078__N19.HOG0006110"
## [2442] "N19.HOG0012367__N19.HOG0015587__N19.HOG0009086__N19.HOG0009459__N19.HOG0009459"
## [2443] "N19.HOG0004985__NA__N19.HOG0010746"
## [2444] "N19.HOG0008079__N19.HOG0008080__N19.HOG0010414"
## [2445] "N19.HOG0000678__NA"
## [2446] "N19.HOG0010230__N19.HOG0010751__N19.HOG0005791__N19.HOG0004189"
## [2447] "N19.HOG0013087__N19.HOG0011194"
## [2448] "N19.HOG0010193__N19.HOG0015284__N19.HOG0006334__N19.HOG0012658"
## [2449] "N19.HOG0013155__N19.HOG0007524"
## [2450] "N19.HOG0005371__N19.HOG0005371"
## [2451] "N19.HOG0013102__N19.HOG0016087__N19.HOG0003868__N19.HOG0014556"
## [2452] "N19.HOG0005314__N19.HOG0013874__N19.HOG0011332"
## [2453] "N19.HOG0004325__NA"
## [2454] "N19.HOG0016084__N19.HOG0013873__N19.HOG0011331"
## [2455] "N19.HOG0003366__N19.HOG0002252"
## [2456] "N19.HOG0005119__N19.HOG0005002__N19.HOG0005215"
## [2457] "N19.HOG0006007__N19.HOG0006091__N19.HOG0004804__N19.HOG0009426__N19.HOG0004930"
## [2458] "N19.HOG0011123__N19.HOG0011123__N19.HOG0011123"
## [2459] "N19.HOG0007888__N19.HOG0002394"
## [2460] "N19.HOG0009427__N19.HOG0005939"
## [2461] "N19.HOG0006318__N19.HOG0005567__N19.HOG0004544"
## [2462] "N19.HOG0010563__N19.HOG0007138__N19.HOG0008491__N19.HOG0004291__N19.HOG0006776"
## [2463] "N19.HOG0016043__N19.HOG0004631"
## [2464] "N19.HOG0010551__N19.HOG0010552"
## [2465] "N19.HOG0010371__N19.HOG0018160"
## [2466] "N19.HOG0015547__N19.HOG0015369"
## [2467] "N19.HOG0005250__N19.HOG0012005"
## [2468] "N19.HOG0003112__N19.HOG0009643"
## [2469] "N19.HOG0004847__N19.HOG0008256__N19.HOG0006975"
## [2470] "N19.HOG0010370__N19.HOG0004778__N19.HOG0008996"
## [2471] "N19.HOG0003225__N19.HOG0011740"
## [2472] "N19.HOG0006357__N19.HOG0008629"
## [2473] "N19.HOG0001062__N19.HOG0011733"
## [2474] "N19.HOG0006221__N19.HOG0009642__N19.HOG0008056"
## [2475] "N19.HOG0010208__N19.HOG0006688"
## [2476] "N19.HOG0015368__N19.HOG0005981__N19.HOG0004181"
## [2477] "N19.HOG0002912__N19.HOG0002912__N19.HOG0013144"
## [2478] "N19.HOG0007624__N19.HOG0013847__N19.HOG0001879"
## [2479] "N19.HOG0014603__N19.HOG0015584"
## [2480] "N19.HOG0002213__N19.HOG0003590"
## [2481] "N19.HOG0008989__N19.HOG0008989"
## [2482] "N19.HOG0002311__N19.HOG0009607__N19.HOG0009815__N19.HOG0006206__N19.HOG0004358__N19.HOG0005134__N19.HOG0014512__N19.HOG0000264__N19.HOG0001961"
## [2483] "N19.HOG0008958__N19.HOG0003724__N19.HOG0010476"
## [2484] "N19.HOG0008707__N19.HOG0009186"
## [2485] "N19.HOG0015169__N19.HOG0007278"
## [2486] "N19.HOG0010002__N19.HOG0007494"
## [2487] "N19.HOG0010558__N19.HOG0011299__N19.HOG0007389__N19.HOG0012124"
## [2488] "N19.HOG0009429__N19.HOG0005135"
## [2489] "N19.HOG0016342__N19.HOG0008715__N19.HOG0012340__N19.HOG0012340__N19.HOG0007931"
## [2490] "N19.HOG0013675__N19.HOG0013674__N19.HOG0008034"
## [2491] "N19.HOG0005550__N19.HOG0015283__N19.HOG0014539"
## [2492] "N19.HOG0001184__N19.HOG0006674__N19.HOG0004502__N19.HOG0000919__N19.HOG0004976__N19.HOG0007480"
## [2493] "N19.HOG0001611__N19.HOG0000738__N19.HOG0000738"
## [2494] "N19.HOG0013073__N19.HOG0013073__N19.HOG0009406"
## [2495] "N19.HOG0010363__N19.HOG0001576__N19.HOG0001576"
## [2496] "N19.HOG0005877__N19.HOG0013715"
## [2497] "N19.HOG0004644__N19.HOG0008730__N19.HOG0008248"
## [2498] "N19.HOG0011724__N19.HOG0010200__N19.HOG0007852__N19.HOG0011723"
## [2499] "N19.HOG0005983__N19.HOG0007496__N19.HOG0005879__N19.HOG0010908__N19.HOG0004428"
## [2500] "N19.HOG0009239__N19.HOG0000179"
## [2501] "N19.HOG0008074__N19.HOG0006994__N19.HOG0016344__N19.HOG0006108__N19.HOG0008073__N19.HOG0007882__N19.HOG0004236"
## [2502] "N19.HOG0003364__N19.HOG0013246"
## [2503] "N19.HOG0009252__N19.HOG0015270"
## [2504] "N19.HOG0013911__N19.HOG0017029__N19.HOG0006651"
## [2505] "N19.HOG0007492__N19.HOG0004423__N19.HOG0004374"
## [2506] "N19.HOG0007848__N19.HOG0000997"
## [2507] "N19.HOG0006587__N19.HOG0009692__N19.HOG0012764"
## [2508] "N19.HOG0010017__N19.HOG0016052"
## [2509] "N19.HOG0014874__N19.HOG0008261__N19.HOG0010049__N19.HOG0002944__N19.HOG0003623__N19.HOG0016082"
## [2510] "N19.HOG0013869__N19.HOG0013242"
## [2511] "N19.HOG0009611__N19.HOG0007665__N19.HOG0010898__N19.HOG0010348"
## [2512] "N19.HOG0013666__N19.HOG0000872"
## [2513] "N19.HOG0007666__N19.HOG0016071"
## [2514] "N19.HOG0008962__N19.HOG0009612__N19.HOG0013083__N19.HOG0013083"
## [2515] "N19.HOG0011699__N19.HOG0011699"
## [2516] "N19.HOG0006064__N19.HOG0006066"
## [2517] "N19.HOG0011121__N19.HOG0011122"
## [2518] "N19.HOG0007118__N19.HOG0003484__N19.HOG0014528"
## [2519] "N19.HOG0016345__N19.HOG0004118__N19.HOG0004187__N19.HOG0012761"
## [2520] "N19.HOG0004159__N19.HOG0016239"
## [2521] "N19.HOG0006419__N19.HOG0003379"
## [2522] "N19.HOG0008294__N19.HOG0006853"
## [2523] "N19.HOG0014526__N19.HOG0011120"
## [2524] "N19.HOG0008961__N19.HOG0012647__N19.HOG0007305"
## [2525] "N19.HOG0002488__N19.HOG0006349"
## [2526] "N19.HOG0006682__N19.HOG0005332"
## [2527] "N19.HOG0013108__N19.HOG0014559"
## [2528] "N19.HOG0015304__NA__N19.HOG0010517__N19.HOG0006452__N19.HOG0009193"
## [2529] "N19.HOG0018174__N19.HOG0018173"
## [2530] "N19.HOG0012007__N19.HOG0002938"
## [2531] "N19.HOG0016302__N19.HOG0012333"
## [2532] "N19.HOG0010696__N19.HOG0015514"
## [2533] "N19.HOG0012331__N19.HOG0012332__N19.HOG0011734"
## [2534] "N19.HOG0004547__N19.HOG0004548"
## [2535] "N19.HOG0003956__N19.HOG0007681"
## [2536] "N19.HOG0010591__N19.HOG0005045__N19.HOG0013128__N19.HOG0005561"
## [2537] "N19.HOG0007704__N19.HOG0018177__N19.HOG0013219__N19.HOG0016096"
## [2538] "N19.HOG0016017__N19.HOG0016309__N19.HOG0004334__N19.HOG0010954"
## [2539] "N19.HOG0008289__N19.HOG0008290"
## [2540] "N19.HOG0002164__N19.HOG0014516"
## [2541] "N19.HOG0018178__N19.HOG0015549__N19.HOG0011927__N19.HOG0008233"
## [2542] "N19.HOG0011483__N19.HOG0004097"
## [2543] "N19.HOG0000956__N19.HOG0000945"
## [2544] "N19.HOG0002020__N19.HOG0005891__N19.HOG0004383"
## [2545] "N19.HOG0018179__N19.HOG0002274"
## [2546] "N19.HOG0002813__N19.HOG0001820__N19.HOG0001819"
## [2547] "N19.HOG0003731__N19.HOG0010018__N19.HOG0007708__N19.HOG0011712"
## [2548] "N19.HOG0010905__N19.HOG0010906"
## [2549] "N19.HOG0013701__N19.HOG0006439"
## [2550] "N19.HOG0010731__N19.HOG0009198__N19.HOG0003234__N19.HOG0003232__N19.HOG0002660"
## [2551] "N19.HOG0017533__N19.HOG0007690__N19.HOG0009416__N19.HOG0000702"
## [2552] "N19.HOG0008041__NA"
## [2553] "N19.HOG0007308__N19.HOG0007123"
## [2554] "N19.HOG0008035__N19.HOG0008259__N19.HOG0000809"
## [2555] "N19.HOG0017535__N19.HOG0008711__N19.HOG0009408__N19.HOG0008959"
## [2556] "N19.HOG0009409__N19.HOG0008235__N19.HOG0003840"
## [2557] "N19.HOG0011697__N19.HOG0015276"
## [2558] "N19.HOG0003647__N19.HOG0017536__N19.HOG0004904"
## [2559] "N19.HOG0005492__N19.HOG0004460"
## [2560] "N19.HOG0002558__N19.HOG0012759__N19.HOG0012054__N19.HOG0011966"
## [2561] "N19.HOG0011751__N19.HOG0016803"
## [2562] "N19.HOG0013138__N19.HOG0013138"
## [2563] "N19.HOG0015502__N19.HOG0002139"
## [2564] "N19.HOG0010545__N19.HOG0010546"
## [2565] "N19.HOG0014518__N19.HOG0005076__N19.HOG0009407__N19.HOG0010186"
## [2566] "N19.HOG0009187__N19.HOG0009217__N19.HOG0011536__N19.HOG0007481__N19.HOG0013658"
## [2567] "N19.HOG0001502__N19.HOG0013659"
## [2568] "N19.HOG0017539__N19.HOG0000613"
## [2569] "N19.HOG0004042__N19.HOG0007498"
## [2570] "N19.HOG0004146__N19.HOG0004145__N19.HOG0008049__N19.HOG0010004"
## [2571] "N19.HOG0003381__N19.HOG0008732__N19.HOG0006454"
## [2572] "N19.HOG0014604__N19.HOG0004967__N19.HOG0007131__N19.HOG0007370__N19.HOG0016074__N19.HOG0002277"
## [2573] "N19.HOG0010914__N19.HOG0010915"
## [2574] "N19.HOG0006974__N19.HOG0006973"
## [2575] "N19.HOG0009884__N19.HOG0012771__N19.HOG0009248__N19.HOG0004851__N19.HOG0004852__N19.HOG0006709"
## [2576] "N19.HOG0016085__N19.HOG0016398"
## [2577] "N19.HOG0012057__N19.HOG0017542"
## [2578] "N19.HOG0002043__N19.HOG0017543"
## [2579] "N19.HOG0002022__N19.HOG0011294__N19.HOG0013886"
## [2580] "NA__N19.HOG0008295__N19.HOG0013250__N19.HOG0001951"
## [2581] "N19.HOG0005686__N19.HOG0009883"
## [2582] "N19.HOG0007240__N19.HOG0006861"
## [2583] "N19.HOG0002605__N19.HOG0005588"
## [2584] "N19.HOG0018196__NA"
## [2585] "N19.HOG0017545__N19.HOG0006230"
## [2586] "N19.HOG0002366__N19.HOG0007152__N19.HOG0003885__N19.HOG0009245__N19.HOG0008774"
## [2587] "N19.HOG0008086__N19.HOG0012370__N19.HOG0007244"
## [2588] "N19.HOG0009687__N19.HOG0000134"
## [2589] "N19.HOG0001409__N19.HOG0010415"
## [2590] "N19.HOG0015551__N19.HOG0008271__N19.HOG0012047"
## [2591] "N19.HOG0008535__N19.HOG0009461__N19.HOG0014792"
## [2592] "N19.HOG0001785__N19.HOG0004116"
## [2593] "N19.HOG0005062__N19.HOG0007689__N19.HOG0006703"
## [2594] "N19.HOG0016807__N19.HOG0002645__N19.HOG0002645__N19.HOG0007692__N19.HOG0001350"
## [2595] "N19.HOG0010315__N19.HOG0017547"
## [2596] "N19.HOG0003582__N19.HOG0006998"
## [2597] "N19.HOG0004081__N19.HOG0009686__N19.HOG0006112"
## [2598] "N19.HOG0016808__N19.HOG0005060"
## [2599] "N19.HOG0015593__N19.HOG0004080"
## [2600] "N19.HOG0010377__N19.HOG0009693__N19.HOG0011146__N19.HOG0007879__N19.HOG0014801"
## [2601] "N19.HOG0017551__N19.HOG0007000__N19.HOG0011618"
## [2602] "N19.HOG0017552__N19.HOG0008975"
## [2603] "N19.HOG0009191__N19.HOG0010724"
## [2604] "N19.HOG0007002__N19.HOG0006589__N19.HOG0009694__N19.HOG0016809__N19.HOG0015608__N19.HOG0001580"
## [2605] "N19.HOG0001999__N19.HOG0001999__N19.HOG0008402"
## [2606] "N19.HOG0001389__N19.HOG0003596__N19.HOG0015299"
## [2607] "N19.HOG0009222__N19.HOG0012305__N19.HOG0008978__N19.HOG0008462__N19.HOG0010725__N19.HOG0006089__N19.HOG0015300__N19.HOG0008976"
## [2608] "N19.HOG0009034__N19.HOG0002492"
## [2609] "N19.HOG0001138__N19.HOG0000136"
## [2610] "N19.HOG0008467__N19.HOG0008469__N19.HOG0008468__N19.HOG0008466__N19.HOG0008466"
## [2611] "N19.HOG0002286__N19.HOG0002289__N19.HOG0000686"
## [2612] "N19.HOG0009627__N19.HOG0009627__N19.HOG0009626"
## [2613] "N19.HOG0007845__N19.HOG0007844"
## [2614] "NA__N19.HOG0014560"
## [2615] "N19.HOG0000800__N19.HOG0001363"
## [2616] "N19.HOG0010197__N19.HOG0005601__N19.HOG0010902__N19.HOG0010356"
## [2617] "N19.HOG0002908__N19.HOG0015308"
## [2618] "N19.HOG0003169__N19.HOG0015602"
## [2619] "N19.HOG0013253__N19.HOG0012060__N19.HOG0001380"
## [2620] "N19.HOG0001497__N19.HOG0001501__N19.HOG0007354"
## [2621] "N19.HOG0013254__N19.HOG0008539"
## [2622] "N19.HOG0012772__N19.HOG0013891__N19.HOG0007158"
## [2623] "N19.HOG0008540__N19.HOG0008297__N19.HOG0002815"
## [2624] "N19.HOG0010795__N19.HOG0010796"
## [2625] "N19.HOG0001857__N19.HOG0002963"
## [2626] "N19.HOG0007894__N19.HOG0007893__N19.HOG0015612"
## [2627] "N19.HOG0007348__N19.HOG0007348"
## [2628] "N19.HOG0013895__N19.HOG0013896"
## [2629] "N19.HOG0013894__N19.HOG0007713"
## [2630] "N19.HOG0007528__N19.HOG0014810__N19.HOG0010055__N19.HOG0008298__N19.HOG0009467__N19.HOG0008545__N19.HOG0008095"
## [2631] "N19.HOG0017558__N19.HOG0016810"
## [2632] "N19.HOG0015503__N19.HOG0013257__N19.HOG0002297"
## [2633] "N19.HOG0012068__N19.HOG0004038"
## [2634] "N19.HOG0013897__N19.HOG0013898"
## [2635] "N19.HOG0006858__N19.HOG0007526__N19.HOG0007162"
## [2636] "N19.HOG0008514__N19.HOG0003450"
## [2637] "N19.HOG0006830__N19.HOG0008979"
## [2638] "N19.HOG0003627__N19.HOG0004647__N19.HOG0006681__N19.HOG0006918__N19.HOG0007124__N19.HOG0007712"
## [2639] "N19.HOG0001200__N19.HOG0009031"
## [2640] "N19.HOG0014675__N19.HOG0010416"
## [2641] "N19.HOG0006796__N19.HOG0009719__N19.HOG0004391"
## [2642] "N19.HOG0008567__N19.HOG0007386__N19.HOG0011267__N19.HOG0002365__N19.HOG0017560__N19.HOG0005477"
## [2643] "N19.HOG0009903__N19.HOG0002506__N19.HOG0005040"
## [2644] "N19.HOG0005145__N19.HOG0013850"
## [2645] "N19.HOG0011978__N19.HOG0011978"
## [2646] "N19.HOG0013759__N19.HOG0017562__N19.HOG0013077"
## [2647] "N19.HOG0001614__N19.HOG0011696"
## [2648] "N19.HOG0015504__N19.HOG0006677__N19.HOG0001287__N19.HOG0014702"
## [2649] "N19.HOG0006445__N19.HOG0012654"
## [2650] "N19.HOG0012653__N19.HOG0000325"
## [2651] "N19.HOG0008039__N19.HOG0008474__N19.HOG0005230"
## [2652] "N19.HOG0008997__N19.HOG0010009"
## [2653] "N19.HOG0016046__N19.HOG0016812"
## [2654] "N19.HOG0013876__N19.HOG0017565"
## [2655] "N19.HOG0015581__N19.HOG0002427__N19.HOG0005985"
## [2656] "N19.HOG0015580__N19.HOG0017567"
## [2657] "N19.HOG0011167__N19.HOG0002493"
## [2658] "N19.HOG0012361__N19.HOG0009677__N19.HOG0009875"
## [2659] "N19.HOG0008656__NA"
## [2660] "N19.HOG0014782__N19.HOG0016790"
## [2661] "N19.HOG0001712__N19.HOG0010413"
## [2662] "N19.HOG0003131__N19.HOG0010242"
## [2663] "N19.HOG0007518__N19.HOG0004029"
## [2664] "N19.HOG0005311__N19.HOG0005311"
## [2665] "N19.HOG0010187__N19.HOG0008234"
## [2666] "N19.HOG0004829__N19.HOG0013119"
## [2667] "N19.HOG0001374__N19.HOG0001374"
## [2668] "N19.HOG0017568__N19.HOG0014529"
## [2669] "N19.HOG0011468__N19.HOG0007664"
## [2670] "N19.HOG0013748__N19.HOG0000776"
## [2671] "N19.HOG0011117__N19.HOG0010347"
## [2672] "N19.HOG0017569__N19.HOG0007363"
## [2673] "N19.HOG0015272__N19.HOG0014522"
## [2674] "N19.HOG0011118__N19.HOG0008709"
## [2675] "N19.HOG0016847__N19.HOG0015506"
## [2676] "N19.HOG0016187__N19.HOG0010808"
## [2677] "N19.HOG0006350__N19.HOG0006351"
## [2678] "N19.HOG0012019__NA__N19.HOG0016764"
## [2679] "NA__NA__Oki7"
## [2680] "N19.HOG0016849__N19.HOG0012019__NA__NA__N19.HOG0016764"
## [2681] "N19.HOG0010605__N19.HOG0010605"
## [2682] "N19.HOG0017571__N19.HOG0013079"
## [2683] "N19.HOG0017572__N19.HOG0017573"
## [2684] "N19.HOG0011131__N19.HOG0008241"
## [2685] "N19.HOG0016813__N19.HOG0009622"
## [2686] "N19.HOG0017575__N19.HOG0002847"
## [2687] "N19.HOG0007675__N19.HOG0007674"
## [2688] "N19.HOG0008735__NA"
## [2689] "N19.HOG0006468__N19.HOG0006470"
## [2690] "N19.HOG0012366__N19.HOG0012366"
## [2691] "N19.HOG0008077__N19.HOG0001181__N19.HOG0010592__N19.HOG0007519__N19.HOG0000838__N19.HOG0006580"
## [2692] "NA__N19.HOG0004234__N19.HOG0006335"
## [2693] "N19.HOG0008980__N19.HOG0008471__N19.HOG0004728"
## [2694] "N19.HOG0005856__N19.HOG0000731"
## [2695] "N19.HOG0009649__N19.HOG0006683"
## [2696] "N19.HOG0004315__N19.HOG0007846__N19.HOG0014565"
## [2697] "N19.HOG0009820__N19.HOG0009821"
## [2698] "N19.HOG0016688__N19.HOG0008470__N19.HOG0010000__N19.HOG0014566"
## [2699] "N19.HOG0004249__N19.HOG0001786"
## [2700] "N19.HOG0010198__N19.HOG0001717"
## [2701] "N19.HOG0009195__N19.HOG0009819__N19.HOG0005051"
## [2702] "N19.HOG0014562__N19.HOG0015319__N19.HOG0000522"
## [2703] "N19.HOG0006617__N19.HOG0008512"
## [2704] "N19.HOG0011333__N19.HOG0011334"
## [2705] "N19.HOG0004352__N19.HOG0004352"
## [2706] "N19.HOG0001070__N19.HOG0010202"
## [2707] "N19.HOG0005943__N19.HOG0001064"
## [2708] "N19.HOG0002526__N19.HOG0002526"
## [2709] "N19.HOG0008487__N19.HOG0008806"
## [2710] "N19.HOG0007865__N19.HOG0010008__N19.HOG0008994"
## [2711] "N19.HOG0009208__N19.HOG0011730__N19.HOG0014626"
## [2712] "N19.HOG0013961__N19.HOG0011252"
## [2713] "N19.HOG0015398__N19.HOG0001069"
## [2714] "N19.HOG0009996__N19.HOG0004797"
## [2715] "N19.HOG0005406__N19.HOG0009616__N19.HOG0004653"
## [2716] "N19.HOG0002422__NA"
## [2717] "N19.HOG0007484__N19.HOG0006451__N19.HOG0006450"
## [2718] "N19.HOG0008061__N19.HOG0009396"
## [2719] "N19.HOG0005967__N19.HOG0005966"
## [2720] "N19.HOG0009894__N19.HOG0002375"
## [2721] "N19.HOG0013114__N19.HOG0009628__N19.HOG0000067"
## [2722] "N19.HOG0008773__N19.HOG0010218__N19.HOG0007522__N19.HOG0012049__N19.HOG0010249__N19.HOG0008087__N19.HOG0005796__N19.HOG0005795__N19.HOG0009247__N19.HOG0009690"
## [2723] "N19.HOG0011158__N19.HOG0006851__N19.HOG0006979"
## [2724] "N19.HOG0009878__N19.HOG0008084"
## [2725] "N19.HOG0008082__N19.HOG0008772__N19.HOG0008083__N19.HOG0009877__N19.HOG0009682__N19.HOG0005792__N19.HOG0014787__N19.HOG0004595"
## [2726] "N19.HOG0013227__N19.HOG0017587"
## [2727] "N19.HOG0017589__N19.HOG0009241__N19.HOG0002473__N19.HOG0002473__N19.HOG0001234__N19.HOG0012707__N19.HOG0011168__N19.HOG0009681__N19.HOG0009019__N19.HOG0016820__N19.HOG0008771__N19.HOG0010766__N19.HOG0008517__N19.HOG0009020"
## [2728] "N19.HOG0007706__N19.HOG0010764__N19.HOG0013858"
## [2729] "N19.HOG0001656__N19.HOG0017590__N19.HOG0016821"
## [2730] "N19.HOG0013687__N19.HOG0001006"
## [2731] "N19.HOG0006448__N19.HOG0000751"
## [2732] "N19.HOG0010910__N19.HOG0011488"
## [2733] "N19.HOG0011725__N19.HOG0017591"
## [2734] "N19.HOG0006567__N19.HOG0003129__N19.HOG0008251"
## [2735] "N19.HOG0010203__N19.HOG0009420__N19.HOG0010005__N19.HOG0001027"
## [2736] "N19.HOG0007072__N19.HOG0003322__N19.HOG0010579__N19.HOG0003320"
## [2737] "N19.HOG0001109__N19.HOG0004980"
## [2738] "N19.HOG0005876__N19.HOG0004107"
## [2739] "N19.HOG0005302__N19.HOG0007851__N19.HOG0001997__N19.HOG0010946__N19.HOG0013703__N19.HOG0009200__N19.HOG0008245__N19.HOG0009824__N19.HOG0009004__N19.HOG0007170"
## [2740] "N19.HOG0005970__N19.HOG0013762__N19.HOG0003473"
## [2741] "N19.HOG0004016__N19.HOG0008720__N19.HOG0008972__N19.HOG0017592"
## [2742] "N19.HOG0012665__N19.HOG0013213"
## [2743] "N19.HOG0010585__N19.HOG0010584"
## [2744] "N19.HOG0012032__N19.HOG0011772"
## [2745] "N19.HOG0006467__N19.HOG0017593__N19.HOG0004076"
## [2746] "N19.HOG0006107__N19.HOG0010590__N19.HOG0000687"
## [2747] "N19.HOG0009675__N19.HOG0008766__N19.HOG0007339"
## [2748] "N19.HOG0007338__N19.HOG0009456__N19.HOG0007337__N19.HOG0007335"
## [2749] "N19.HOG0012036__N19.HOG0009237"
## [2750] "N19.HOG0017595__N19.HOG0017594"
## [2751] "N19.HOG0010586__N19.HOG0010588"
## [2752] "N19.HOG0017596__N19.HOG0008990"
## [2753] "N19.HOG0000936__N19.HOG0015352"
## [2754] "N19.HOG0003271__N19.HOG0008059__N19.HOG0008058"
## [2755] "N19.HOG0003953__N19.HOG0003954"
## [2756] "N19.HOG0017598__N19.HOG0000383"
## [2757] "N19.HOG0015339__N19.HOG0007130__N19.HOG0010379"
## [2758] "N19.HOG0002491__N19.HOG0012300__N19.HOG0006964"
## [2759] "N19.HOG0003975__N19.HOG0000402__N19.HOG0000401"
## [2760] "N19.HOG0004752__N19.HOG0011700__N19.HOG0001709"
## [2761] "N19.HOG0003529__N19.HOG0008968"
## [2762] "N19.HOG0010899__N19.HOG0011703"
## [2763] "N19.HOG0007669__N19.HOG0005937__N19.HOG0004650"
## [2764] "N19.HOG0005779__N19.HOG0005779"
## [2765] "N19.HOG0013194__N19.HOG0013194"
## [2766] "N19.HOG0005226__N19.HOG0009413__N19.HOG0004546"
## [2767] "N19.HOG0013097__N19.HOG0008447__N19.HOG0009619__N19.HOG0009997__N19.HOG0017601__N19.HOG0008969__N19.HOG0008970"
## [2768] "N19.HOG0017602__N19.HOG0013681__N19.HOG0000754"
## [2769] "N19.HOG0001225__N19.HOG0006822__N19.HOG0006823"
## [2770] "N19.HOG0013683__N19.HOG0014547"
## [2771] "N19.HOG0012663__N19.HOG0012663"
## [2772] "N19.HOG0004175__N19.HOG0008719__N19.HOG0007670__N19.HOG0006966"
## [2773] "N19.HOG0012664__N19.HOG0004411"
## [2774] "N19.HOG0006088__N19.HOG0006088"
## [2775] "N19.HOG0016824__N19.HOG0005043"
## [2776] "N19.HOG0010454__N19.HOG0010360"
## [2777] "N19.HOG0011991__N19.HOG0002599__N19.HOG0006223__N19.HOG0013731__N19.HOG0007858__N19.HOG0014616__N19.HOG0008495__N19.HOG0007504"
## [2778] "N19.HOG0010006__N19.HOG0014617__N19.HOG0008737"
## [2779] "N19.HOG0008991__N19.HOG0008992"
## [2780] "N19.HOG0003003__N19.HOG0003561"
## [2781] "N19.HOG0016034__N19.HOG0012001__N19.HOG0000330"
## [2782] "N19.HOG0000055__N19.HOG0002731__N19.HOG0000667"
## [2783] "N19.HOG0011128__N19.HOG0010772__N19.HOG0005659"
## [2784] "N19.HOG0006208__N19.HOG0006207"
## [2785] "N19.HOG0008967__N19.HOG0014534"
## [2786] "N19.HOG0015964__N19.HOG0015965"
## [2787] "N19.HOG0005358__N19.HOG0011979__N19.HOG0007217__NA"
## [2788] "N19.HOG0008237__N19.HOG0008031"
## [2789] "N19.HOG0011471__N19.HOG0011471__N19.HOG0001364"
## [2790] "N19.HOG0002187__N19.HOG0008417"
## [2791] "N19.HOG0012031__N19.HOG0001669"
## [2792] "N19.HOG0002693__N19.HOG0002692"
## [2793] "N19.HOG0001765__N19.HOG0013208"
## [2794] "N19.HOG0016093__N19.HOG0002849"
## [2795] "N19.HOG0006693__N19.HOG0012030"
## [2796] "N19.HOG0002000__N19.HOG0001489"
## [2797] "N19.HOG0008282__N19.HOG0002309__N19.HOG0003940__N19.HOG0008511__N19.HOG0008067"
## [2798] "N19.HOG0011516__N19.HOG0013209"
## [2799] "N19.HOG0008068__N19.HOG0008521"
## [2800] "NA__N19.HOG0013021"
## [2801] "N19.HOG0006574__N19.HOG0005239"
## [2802] "N19.HOG0002887__N19.HOG0000774__N19.HOG0013835__N19.HOG0007875"
## [2803] "N19.HOG0008763__N19.HOG0009633__N19.HOG0008066__N19.HOG0003598"
## [2804] "N19.HOG0016245__N19.HOG0009674"
## [2805] "N19.HOG0012354__N19.HOG0009870__N19.HOG0005050__N19.HOG0010241__N19.HOG0011635__N19.HOG0013190"
## [2806] "N19.HOG0017608__N19.HOG0010948__N19.HOG0004431__N19.HOG0009672__N19.HOG0000295__N19.HOG0018201__N19.HOG0009860"
## [2807] "N19.HOG0007874__N19.HOG0008281__N19.HOG0010042"
## [2808] "N19.HOG0009016__N19.HOG0008280__N19.HOG0008762__N19.HOG0008761__N19.HOG0017609__N19.HOG0009015__N19.HOG0013830"
## [2809] "N19.HOG0008279__N19.HOG0008278__N19.HOG0013741"
## [2810] "N19.HOG0018202__N19.HOG0004551"
## [2811] "N19.HOG0004549__N19.HOG0010569__N19.HOG0005980__N19.HOG0010401__N19.HOG0007327__N19.HOG0008518__N19.HOG0000977"
## [2812] "N19.HOG0009833__N19.HOG0003213"
## [2813] "N19.HOG0006305__N19.HOG0006305"
## [2814] "N19.HOG0003468__N19.HOG0003471__N19.HOG0015537"
## [2815] "N19.HOG0016246__N19.HOG0014648"
## [2816] "N19.HOG0001824__N19.HOG0016828"
## [2817] "N19.HOG0002520__N19.HOG0001963"
## [2818] "N19.HOG0013842__N19.HOG0017611"
## [2819] "N19.HOG0001755__N19.HOG0001757"
## [2820] "N19.HOG0013841__N19.HOG0000659"
## [2821] "N19.HOG0014776__N19.HOG0005785__N19.HOG0005785"
## [2822] "N19.HOG0004934__N19.HOG0013159"
## [2823] "N19.HOG0010215__N19.HOG0008285"
## [2824] "N19.HOG0005666__N19.HOG0009232__N19.HOG0008284__N19.HOG0015572"
## [2825] "N19.HOG0002329__N19.HOG0008283"
## [2826] "N19.HOG0009231__N19.HOG0009231"
## [2827] "N19.HOG0008527__N19.HOG0004933__N19.HOG0008526__N19.HOG0016830__N19.HOG0010774"
## [2828] "N19.HOG0001491__N19.HOG0008525"
## [2829] "N19.HOG0007876__N19.HOG0008764"
## [2830] "N19.HOG0003532__N19.HOG0004077"
## [2831] "N19.HOG0008523__N19.HOG0010411__N19.HOG0009846__N19.HOG0003574__N19.HOG0011324__N19.HOG0009433__NA__N19.HOG0005143"
## [2832] "N19.HOG0013222__N19.HOG0007147__N19.HOG0007146__N19.HOG0004372"
## [2833] "N19.HOG0009017__N19.HOG0000413"
## [2834] "N19.HOG0009457__N19.HOG0004376__N19.HOG0010243__N19.HOG0009458__N19.HOG0012668"
## [2835] "N19.HOG0017614__NA__N19.HOG0016070"
## [2836] "N19.HOG0011282__N19.HOG0017615"
## [2837] "N19.HOG0001148__N19.HOG0005138"
## [2838] "N19.HOG0013706__N19.HOG0013706"
## [2839] "N19.HOG0013665__N19.HOG0006679__N19.HOG0008966__N19.HOG0011880__N19.HOG0016248__N19.HOG0004233__N19.HOG0010380"
## [2840] "N19.HOG0014527__N19.HOG0005657__N19.HOG0005658__N19.HOG0010189__N19.HOG0005961__NA__N19.HOG0005340__N19.HOG0003788"
## [2841] "N19.HOG0004179__N19.HOG0016101"
## [2842] "N19.HOG0005347__N19.HOG0011472__N19.HOG0013189__N19.HOG0007482"
## [2843] "N19.HOG0016619__N19.HOG0002137"
## [2844] "N19.HOG0015417__N19.HOG0010407__N19.HOG0006402"
## [2845] "N19.HOG0002926__N19.HOG0011232"
## [2846] "N19.HOG0010057__N19.HOG0010058"
## [2847] "N19.HOG0008477__N19.HOG0005485__N19.HOG0005484__N19.HOG0000647"
## [2848] "N19.HOG0014587__N19.HOG0009809__N19.HOG0002618"
## [2849] "N19.HOG0002105__N19.HOG0013708"
## [2850] "N19.HOG0002536__N19.HOG0015328"
## [2851] "N19.HOG0017618__N19.HOG0017619__N19.HOG0005170"
## [2852] "N19.HOG0008986__NA__N19.HOG0014584"
## [2853] "N19.HOG0013245__N19.HOG0006707"
## [2854] "N19.HOG0000913__N19.HOG0010051__N19.HOG0010052__N19.HOG0004557"
## [2855] "N19.HOG0014115__N19.HOG0002495"
## [2856] "N19.HOG0008778__N19.HOG0002814"
## [2857] "N19.HOG0013883__N19.HOG0014676__N19.HOG0006367"
## [2858] "N19.HOG0011915__N19.HOG0014800"
## [2859] "N19.HOG0007486__N19.HOG0013901__N19.HOG0007715"
## [2860] "N19.HOG0013107__N19.HOG0011987__N19.HOG0010543__N19.HOG0008243"
## [2861] "N19.HOG0002257__N19.HOG0000301"
## [2862] "N19.HOG0007471__N19.HOG0001693__N19.HOG0002787"
## [2863] "N19.HOG0001813__N19.HOG0002908"
## [2864] "N19.HOG0004002__N19.HOG0005360"
## [2865] "N19.HOG0009199__N19.HOG0002816"
## [2866] "N19.HOG0014574__N19.HOG0001924"
## [2867] "N19.HOG0011714__N19.HOG0016005"
## [2868] "N19.HOG0007312__N19.HOG0011688__N19.HOG0005048__N19.HOG0001599"
## [2869] "N19.HOG0010753__N19.HOG0013116"
## [2870] "N19.HOG0012321__N19.HOG0009639__N19.HOG0005605"
## [2871] "N19.HOG0007503__N19.HOG0007502"
## [2872] "N19.HOG0007483__N19.HOG0003882"
## [2873] "N19.HOG0004714__N19.HOG0011989__N19.HOG0007490__N19.HOG0004712"
## [2874] "N19.HOG0006331__NA__N19.HOG0014568__N19.HOG0005228__N19.HOG0009823__N19.HOG0004017"
## [2875] "N19.HOG0004978__N19.HOG0005582__N19.HOG0008395__N19.HOG0008724__N19.HOG0010729"
## [2876] "N19.HOG0001720__N19.HOG0006449__N19.HOG0008901"
## [2877] "N19.HOG0009621__N19.HOG0008973__N19.HOG0011984__N19.HOG0009998__N19.HOG0006937__N19.HOG0011985__N19.HOG0008974__N19.HOG0005044"
## [2878] "N19.HOG0012318__N19.HOG0003983__N19.HOG0007254"
## [2879] "N19.HOG0002752__N19.HOG0001351"
## [2880] "N19.HOG0017623__N19.HOG0017622"
## [2881] "N19.HOG0007509__N19.HOG0004149__N19.HOG0004148"
## [2882] "N19.HOG0006971__N19.HOG0006517__N19.HOG0006717__N19.HOG0011406"
## [2883] "N19.HOG0001767__N19.HOG0009827"
## [2884] "N19.HOG0004474__N19.HOG0005305"
## [2885] "N19.HOG0010742__N19.HOG0009203"
## [2886] "N19.HOG0000335__N19.HOG0013831__N19.HOG0005390"
## [2887] "N19.HOG0007126__N19.HOG0007495__N19.HOG0006205"
## [2888] "N19.HOG0013882__N19.HOG0013881"
## [2889] "N19.HOG0014807__N19.HOG0014809__N19.HOG0005151"
## [2890] "N19.HOG0004035__N19.HOG0004511"
## [2891] "N19.HOG0012678__N19.HOG0011485__N19.HOG0011485"
## [2892] "N19.HOG0003171__N19.HOG0016008"
## [2893] "N19.HOG0011486__N19.HOG0011486"
## [2894] "N19.HOG0014579__N19.HOG0015326__N19.HOG0003346"
## [2895] "N19.HOG0013705__N19.HOG0004359__N19.HOG0001466__N19.HOG0009417"
## [2896] "N19.HOG0007314__N19.HOG0013707"
## [2897] "N19.HOG0004366__N19.HOG0004365"
## [2898] "N19.HOG0006565__N19.HOG0011718"
## [2899] "N19.HOG0011993__N19.HOG0011993"
## [2900] "N19.HOG0008726__N19.HOG0008246"
## [2901] "N19.HOG0004053__N19.HOG0006338__N19.HOG0006339__N19.HOG0003981"
## [2902] "N19.HOG0014582__N19.HOG0009242__N19.HOG0009244"
## [2903] "N19.HOG0002246__N19.HOG0006215"
## [2904] "N19.HOG0000209__N19.HOG0003395"
## [2905] "N19.HOG0016835__N19.HOG0008046"
## [2906] "N19.HOG0011174__N19.HOG0005090"
## [2907] "N19.HOG0016095__N19.HOG0008287"
## [2908] "N19.HOG0017630__NA"
## [2909] "N19.HOG0004182__N19.HOG0003864__N19.HOG0007500__N19.HOG0011489"
## [2910] "N19.HOG0017632__N19.HOG0014634"
## [2911] "N19.HOG0002551__N19.HOG0001011"
## [2912] "N19.HOG0005664__N19.HOG0001026"
## [2913] "N19.HOG0015365__N19.HOG0004599"
## [2914] "N19.HOG0003380__N19.HOG0003380"
## [2915] "N19.HOG0010205__N19.HOG0013726"
## [2916] "N19.HOG0002688__N19.HOG0007316__N19.HOG0009421"
## [2917] "N19.HOG0009647__N19.HOG0006837__N19.HOG0006838"
## [2918] "N19.HOG0008252__N19.HOG0006838"
## [2919] "N19.HOG0009828__N19.HOG0008050__N19.HOG0008050"
## [2920] "N19.HOG0010573__N19.HOG0006456__N19.HOG0006229"
## [2921] "N19.HOG0004317__N19.HOG0007856__N19.HOG0003240__N19.HOG0008051__N19.HOG0003569"
## [2922] "N19.HOG0003127__N19.HOG0006220"
## [2923] "N19.HOG0006105__N19.HOG0004434__N19.HOG0006990__N19.HOG0002956__N19.HOG0006991"
## [2924] "N19.HOG0013845__N19.HOG0010782"
## [2925] "N19.HOG0010814__N19.HOG0009235"
## [2926] "N19.HOG0004191__N19.HOG0011517"
## [2927] "N19.HOG0015575__N19.HOG0013852"
## [2928] "N19.HOG0008528__N19.HOG0004651"
## [2929] "N19.HOG0009233__N19.HOG0001293"
## [2930] "N19.HOG0011774__N19.HOG0001030"
## [2931] "N19.HOG0013844__N19.HOG0012750"
## [2932] "N19.HOG0017637__N19.HOG0017636"
## [2933] "N19.HOG0013146__N19.HOG0013738"
## [2934] "N19.HOG0009644__N19.HOG0015410__N19.HOG0005955__N19.HOG0014644__N19.HOG0010209"
## [2935] "N19.HOG0015372__N19.HOG0015371"
## [2936] "N19.HOG0005892__N19.HOG0010969"
## [2937] "N19.HOG0005546__N19.HOG0004026__N19.HOG0000688"
## [2938] "N19.HOG0013237__N19.HOG0007343__N19.HOG0003086"
## [2939] "N19.HOG0004526__N19.HOG0006357"
## [2940] "N19.HOG0011142__N19.HOG0005367"
## [2941] "N19.HOG0011521__N19.HOG0011521__N19.HOG0004378"
## [2942] "N19.HOG0005365__N19.HOG0003653__N19.HOG0015415__N19.HOG0007521"
## [2943] "NA__NA__N19.HOG0014671"
## [2944] "N19.HOG0010354__N19.HOG0010355"
## [2945] "N19.HOG0007458__N19.HOG0003579"
## [2946] "N19.HOG0006684__N19.HOG0015325"
## [2947] "N19.HOG0001508__N19.HOG0013154"
## [2948] "N19.HOG0006347__N19.HOG0009205__N19.HOG0008254__N19.HOG0012693__N19.HOG0008052"
## [2949] "N19.HOG0004642__N19.HOG0007860__N19.HOG0007860__N19.HOG0012709"
## [2950] "N19.HOG0003389__N19.HOG0003389__N19.HOG0007859"
## [2951] "N19.HOG0009431__N19.HOG0014672__N19.HOG0004607__N19.HOG0003015"
## [2952] "N19.HOG0013698__N19.HOG0013697__N19.HOG0013697"
## [2953] "N19.HOG0008472__N19.HOG0011281__N19.HOG0008982__N19.HOG0000984"
## [2954] "N19.HOG0003153__N19.HOG0009415__N19.HOG0009197__N19.HOG0004138__N19.HOG0008473__N19.HOG0009414__N19.HOG0008038"
## [2955] "N19.HOG0012765__N19.HOG0004558"
## [2956] "NA__N19.HOG0001455__N19.HOG0007350__N19.HOG0009037__N19.HOG0010253"
## [2957] "N19.HOG0009465__N19.HOG0002953__N19.HOG0005315"
## [2958] "N19.HOG0007306__N19.HOG0006649"
## [2959] "N19.HOG0015969__N19.HOG0012660"
## [2960] "NA__NA__NA__Oki8"
## [2961] "NA__NA__Oki9"
## [2962] "N19.HOG0004773__NA__NA__N19.HOG0015554"
## [2963] "N19.HOG0013090__N19.HOG0013090"
## [2964] "N19.HOG0006181__N19.HOG0006180"
## [2965] "N19.HOG0017641__N19.HOG0015500__N19.HOG0013677__N19.HOG0002606"
## [2966] "N19.HOG0005098__N19.HOG0005098__N19.HOG0013092"
## [2967] "N19.HOG0008460__N19.HOG0007121__N19.HOG0007121"
## [2968] "N19.HOG0010217__N19.HOG0014542"
## [2969] "N19.HOG0009618__N19.HOG0008672"
## [2970] "N19.HOG0007877__N19.HOG0006579__N19.HOG0003696__N19.HOG0011518__N19.HOG0008530__N19.HOG0017643"
## [2971] "N19.HOG0015571__N19.HOG0017644"
## [2972] "N19.HOG0011278__N19.HOG0011277__N19.HOG0011279__N19.HOG0003625"
## [2973] "N19.HOG0005851__N19.HOG0005853__N19.HOG0005852__N19.HOG0009157__N19.HOG0014669"
## [2974] "N19.HOG0014733__N19.HOG0016932"
## [2975] "N19.HOG0015407__N19.HOG0011790__N19.HOG0001088"
## [2976] "N19.HOG0012762__N19.HOG0017646"
## [2977] "N19.HOG0015409__N19.HOG0000983__N19.HOG0000995__N19.HOG0006342"
## [2978] "N19.HOG0005139__N19.HOG0003866__N19.HOG0001932__N19.HOG0008053__N19.HOG0009424"
## [2979] "N19.HOG0007136__N19.HOG0004924__N19.HOG0004924__N19.HOG0008743"
## [2980] "N19.HOG0007861__N19.HOG0012003"
## [2981] "N19.HOG0003756__N19.HOG0002854"
## [2982] "NA__N19.HOG0010406__N19.HOG0016088__N19.HOG0004981"
## [2983] "N19.HOG0013724__N19.HOG0009637__N19.HOG0006676__N19.HOG0009636__N19.HOG0003399"
## [2984] "N19.HOG0011785__N19.HOG0011786"
## [2985] "N19.HOG0011261__N19.HOG0017649"
## [2986] "N19.HOG0008538__N19.HOG0007892"
## [2987] "N19.HOG0009829__N19.HOG0015399"
## [2988] "N19.HOG0008507__N19.HOG0004939__N19.HOG0006475__N19.HOG0010252"
## [2989] "N19.HOG0012004__N19.HOG0012004__N19.HOG0012004__N19.HOG0010201__N19.HOG0010201"
## [2990] "N19.HOG0003095__N19.HOG0007497"
## [2991] "N19.HOG0007129__N19.HOG0006224__N19.HOG0000691"
## [2992] "N19.HOG0001149__N19.HOG0004499"
## [2993] "N19.HOG0015615__N19.HOG0016840"
## [2994] "N19.HOG0001796__N19.HOG0012365"
## [2995] "N19.HOG0017650__N19.HOG0015586"
## [2996] "N19.HOG0009018__N19.HOG0004157"
## [2997] "N19.HOG0010329__N19.HOG0003222__N19.HOG0007683__N19.HOG0009209"
## [2998] "N19.HOG0008741__N19.HOG0001955"
## [2999] "N19.HOG0004000__N19.HOG0010572__N19.HOG0004001__N19.HOG0008255"
## [3000] "N19.HOG0005974__N19.HOG0010206"
## [3001] "N19.HOG0007317__N19.HOG0004931__NA__N19.HOG0000535"
## [3002] "N19.HOG0005169__N19.HOG0015589"
## [3003] "N19.HOG0005232__N19.HOG0003741"
## [3004] "N19.HOG0006687__N19.HOG0008488__N19.HOG0009831__N19.HOG0007686"
## [3005] "N19.HOG0012699__N19.HOG0010743__N19.HOG0008744__N19.HOG0006832__N19.HOG0007685__N19.HOG0006978"
## [3006] "N19.HOG0008779__N19.HOG0001086"
## [3007] "N19.HOG0017653__N19.HOG0016841__N19.HOG0010395__N19.HOG0004242__N19.HOG0004241"
## [3008] "N19.HOG0014673__N19.HOG0012324__N19.HOG0012323"
## [3009] "N19.HOG0017655__N19.HOG0006629"
## [3010] "N19.HOG0016843__N19.HOG0006626"
## [3011] "N19.HOG0009640__N19.HOG0009210__N19.HOG0017656"
## [3012] "N19.HOG0004326__N19.HOG0003802__N19.HOG0010369__N19.HOG0003315"
## [3013] "N19.HOG0014666__N19.HOG0004322"
## [3014] "N19.HOG0014553__N19.HOG0012304__N19.HOG0000713"
## [3015] "N19.HOG0011273__N19.HOG0004379"
## [3016] "N19.HOG0013761__N19.HOG0000370"
## [3017] "N19.HOG0012360__N19.HOG0016844__N19.HOG0008075__N19.HOG0001505"
## [3018] "N19.HOG0011999__N19.HOG0012000"
## [3019] "N19.HOG0006839__N19.HOG0017658"
## [3020] "N19.HOG0006471__N19.HOG0010793__N19.HOG0009463"
## [3021] "NA__N19.HOG0011137__N19.HOG0012649"
## [3022] "N19.HOG0010144__N19.HOG0002932"
## [3023] "N19.HOG0014596__N19.HOG0004720__N19.HOG0011996"
## [3024] "N19.HOG0016846__N19.HOG0008255"
## [3025] "N19.HOG0012939__N19.HOG0008400"
## [3026] "N19.HOG0009741__N19.HOG0007612"
## [3027] "N19.HOG0000745__N19.HOG0013821"
## [3028] "N19.HOG0013364__N19.HOG0016081"
## [3029] "N19.HOG0015358__N19.HOG0014629"
## [3030] "N19.HOG0016251__N19.HOG0004845"
## [3031] "N19.HOG0006235__N19.HOG0006237"
## [3032] "N19.HOG0010353__N19.HOG0014728"
## [3033] "N19.HOG0006086__N19.HOG0002252"
## [3034] "N19.HOG0016851__N19.HOG0017667__N19.HOG0016851"
## [3035] "N19.HOG0010820__N19.HOG0010821"
## [3036] "N19.HOG0003259__N19.HOG0001559__N19.HOG0014623"
## [3037] "N19.HOG0008993__N19.HOG0006460"
## [3038] "N19.HOG0010549__N19.HOG0002867"
## [3039] "N19.HOG0010548__N19.HOG0005863"
## [3040] "N19.HOG0008479__N19.HOG0009419__N19.HOG0009631__N19.HOG0008731__N19.HOG0007854"
## [3041] "N19.HOG0011144__N19.HOG0009201__N19.HOG0008250"
## [3042] "N19.HOG0006633__N19.HOG0006632__N19.HOG0004454"
## [3043] "N19.HOG0007677__N19.HOG0007677__N19.HOG0007677"
## [3044] "N19.HOG0000540__N19.HOG0005420"
## [3045] "N19.HOG0009683__N19.HOG0010211__N19.HOG0004442"
## [3046] "N19.HOG0011478__N19.HOG0005868__N19.HOG0006746"
## [3047] "N19.HOG0003154__N19.HOG0003154__N19.HOG0002483__N19.HOG0007711__N19.HOG0007309__N19.HOG0003006"
## [3048] "N19.HOG0012050__N19.HOG0012050"
## [3049] "N19.HOG0009880__N19.HOG0009437"
## [3050] "N19.HOG0005160__N19.HOG0007156__N19.HOG0003517__N19.HOG0003517__N19.HOG0006117"
## [3051] "N19.HOG0001610__N19.HOG0011336"
## [3052] "N19.HOG0011819__N19.HOG0011818"
## [3053] "N19.HOG0013545__N19.HOG0016689"
## [3054] "N19.HOG0013172__N19.HOG0001493"
## [3055] "N19.HOG0012758__N19.HOG0002342"
## [3056] "N19.HOG0013182__N19.HOG0017674"
## [3057] "NA__NA__Oki10"
## [3058] "N19.HOG0003041__N19.HOG0000989"
## [3059] "N19.HOG0001031__N19.HOG0007847"
## [3060] "N19.HOG0017676__N19.HOG0011583"
## [3061] "N19.HOG0009338__N19.HOG0012008__NA__N19.HOG0012008__N19.HOG0010644__N19.HOG0011441__N19.HOG0002364"
## [3062] "N19.HOG0005550__N19.HOG0005163"
## [3063] "N19.HOG0009038__N19.HOG0007161"
## [3064] "N19.HOG0008541__N19.HOG0008542"
## [3065] "N19.HOG0003508__N19.HOG0004849"
## [3066] "N19.HOG0011818__N19.HOG0015329"
## [3067] "N19.HOG0015405__N19.HOG0000278"
## [3068] "N19.HOG0016857__N19.HOG0016856"
## [3069] "N19.HOG0016662__N19.HOG0015342__N19.HOG0010238"
## [3070] "N19.HOG0007324__N19.HOG0017680"
## [3071] "N19.HOG0012671__N19.HOG0005309__N19.HOG0005309__N19.HOG0013716"
## [3072] "N19.HOG0003855__N19.HOG0013670"
## [3073] "N19.HOG0005781__N19.HOG0005781"
## [3074] "N19.HOG0008478__N19.HOG0008478"
## [3075] "NA__N19.HOG0009826"
## [3076] "N19.HOG0012682__N19.HOG0011134__N19.HOG0011135"
## [3077] "N19.HOG0009634__N19.HOG0000906"
## [3078] "N19.HOG0012012__N19.HOG0017682"
## [3079] "N19.HOG0010048__N19.HOG0010048__N19.HOG0006586__N19.HOG0016253__N19.HOG0008044"
## [3080] "N19.HOG0014578__N19.HOG0008476__NA"
## [3081] "N19.HOG0011484__N19.HOG0009630__N19.HOG0009630"
## [3082] "N19.HOG0009038__N19.HOG0010251"
## [3083] "N19.HOG0008960__N19.HOG0016654"
## [3084] "N19.HOG0009609__N19.HOG0009609__N19.HOG0009609"
## [3085] "N19.HOG0002464__N19.HOG0004570__NA"
## [3086] "N19.HOG0010943__N19.HOG0006935__N19.HOG0000985"
## [3087] "N19.HOG0004646__N19.HOG0004646"
## [3088] "N19.HOG0010188__N19.HOG0011469"
## [3089] "N19.HOG0017686__N19.HOG0003859"
## [3090] "N19.HOG0015426__N19.HOG0017756__N19.HOG0013799"
## [3091] "N19.HOG0005672__NA"
## [3092] "N19.HOG0010998__N19.HOG0012686"
## [3093] "N19.HOG0003725__N19.HOG0002794"
## [3094] "N19.HOG0013893__N19.HOG0010425__N19.HOG0003515__N19.HOG0004493__N19.HOG0006569__N19.HOG0012326__N19.HOG0008510__N19.HOG0009842"
## [3095] "N19.HOG0016860__N19.HOG0011793"
## [3096] "N19.HOG0016288__N19.HOG0011808"
## [3097] "N19.HOG0015519__N19.HOG0012415"
## [3098] "N19.HOG0016289__N19.HOG0017000__N19.HOG0006351"
## [3099] "N19.HOG0013864__N19.HOG0000491"
## [3100] "N19.HOG0001098__N19.HOG0001284"
## [3101] "N19.HOG0005680__N19.HOG0012053"
## [3102] "N19.HOG0010382__N19.HOG0010382__N19.HOG0010382"
## [3103] "N19.HOG0000629__N19.HOG0006625"
## [3104] "N19.HOG0008832__N19.HOG0004082"
## [3105] "N19.HOG0005725__N19.HOG0013164"
## [3106] "N19.HOG0009952__N19.HOG0009951"
## [3107] "N19.HOG0018060__N19.HOG0018059"
## [3108] "N19.HOG0002390__N19.HOG0002391"
## [3109] "NA__N19.HOG0018057"
## [3110] "N19.HOG0012235__N19.HOG0016717"
## [3111] "N19.HOG0009952__N19.HOG0018047"
## [3112] "N19.HOG0011319__N19.HOG0002397__N19.HOG0002400"
## [3113] "N19.HOG0003949__N19.HOG0006910"
## [3114] "N19.HOG0006352__N19.HOG0006352__N19.HOG0006352"
## [3115] "N19.HOG0013811__N19.HOG0012027__N19.HOG0012027__N19.HOG0013197"
## [3116] "N19.HOG0007447__N19.HOG0007445"
## [3117] "N19.HOG0013811__N19.HOG0012027__N19.HOG0013197"
## [3118] "N19.HOG0006352__N19.HOG0006352"
## [3119] "N19.HOG0015528__N19.HOG0010809"
## [3120] "N19.HOG0013196__N19.HOG0018184"
## [3121] "N19.HOG0015540__N19.HOG0015540__N19.HOG0004228"
## [3122] "N19.HOG0016949__N19.HOG0016950"
## [3123] "N19.HOG0016947__N19.HOG0015531"
## [3124] "N19.HOG0011892__N19.HOG0010072"Compare exact-matching operons with HOGs and OGs
compare_exact_operons_by_HOGs <- function(op_sp1, op_sp2, op_sp3, sp_names=c("Oki", "Osa", "Bar"), return_what="renamed_operons") {
# Don't let the function be run on an un-annotated operons() GRanges
stopifnot(length(op_sp1$HOGs)>0)
operon_sets <- list(
hog_characterlist_to_hog_id(op_sp1, cl_name = "HOGs", sp=sp_names[[1]]),
hog_characterlist_to_hog_id(op_sp2, cl_name = "HOGs", sp=sp_names[[2]]),
hog_characterlist_to_hog_id(op_sp3, cl_name = "HOGs", sp=sp_names[[3]])
)
names(operon_sets) <- sp_names
# Make a list of unique operon IDs combining all species' operons.
operon_ids <- paste0("o", 1:length(unique(unlist(operon_sets))))
all_operons <- sort(unique(unlist(operon_sets)))
names(all_operons) <- operon_ids
# Rename operons by shared coordinates
renamed_operons <- lapply(operon_sets, function(o) {
names(o) <- names(all_operons[match(o, all_operons)])
# Remove duplicate operons, also
names(o) #|> unique()
})
# Extract GRanges if necessary
if(return_what=="renamed_operons"){
return(renamed_operons)
} else if (return_what == "GRanges") {
gr_sl <- SimpleList()
gr_sl[[sp_names[1]]] <- op_sp1
gr_sl[[sp_names[2]]] <- op_sp2
gr_sl[[sp_names[3]]] <- op_sp3
gr_sl[[paste0(sp_names[1], "_", sp_names[2])]] <- op_sp1[which(operon_sets[[1]] %in% operon_sets[[2]] )]
gr_sl[[paste0(sp_names[1], "_", sp_names[3])]] <- op_sp1[which(operon_sets[[1]] %in% operon_sets[[3]] )]
gr_sl[[paste0(sp_names[2], "_", sp_names[3])]] <- op_sp1[which(operon_sets[[2]] %in% operon_sets[[3]] )]
return(gr_sl)
}
}
# Preview for what the function does:
lapply(compare_exact_operons_by_HOGs(operons_hogs$Oki, operons_hogs$Osa, operons_hogs$Bar, sp_names=c("Oki", "Osa", "Bar")), head)## $Oki
## [1] "o793" "o5294" "o6290" "o4925" "o5704" "o432"
##
## $Osa
## [1] "o3957" "o475" "o3652" "o6644" "o6109" "o2533"
##
## $Bar
## [1] "o2563" "o1006" "o5710" "o5603" "o2445" "o1387"
compare_exact_operons_by_OGs <- function(op_sp1, op_sp2, op_sp3, sp_names=c("Oki", "Osa", "Bar"), return_what="renamed_operons") {
# Don't let the function be run on an un-annotated operons() GRanges
stopifnot(length(op_sp1$OGs)>0)
operon_sets <- list(
hog_characterlist_to_hog_id(op_sp1, cl_name = "OGs", sp=sp_names[[1]]),
hog_characterlist_to_hog_id(op_sp2, cl_name = "OGs", sp=sp_names[[2]]),
hog_characterlist_to_hog_id(op_sp3, cl_name = "OGs", sp=sp_names[[3]])
)
names(operon_sets) <- sp_names
# Make a list of unique operon IDs combining all species' operons.
operon_ids <- paste0("o", 1:length(unique(unlist(operon_sets))))
all_operons <- sort(unique(unlist(operon_sets)))
names(all_operons) <- operon_ids
# Rename operons by shared coordinates
renamed_operons <- lapply(operon_sets, function(o) {
names(o) <- names(all_operons[match(o, all_operons)])
# Remove duplicate operons, also
names(o) #|> unique()
})
# Extract GRanges if necessary
if(return_what=="renamed_operons"){
return(renamed_operons)
} else if (return_what == "GRanges") {
gr_sl <- SimpleList()
gr_sl[[sp_names[1]]] <- op_sp1
gr_sl[[sp_names[2]]] <- op_sp2
gr_sl[[sp_names[3]]] <- op_sp3
gr_sl[[paste0(sp_names[1], "_", sp_names[2])]] <- op_sp1[which(operon_sets[[1]] %in% operon_sets[[2]] )]
gr_sl[[paste0(sp_names[1], "_", sp_names[3])]] <- op_sp1[which(operon_sets[[1]] %in% operon_sets[[3]] )]
gr_sl[[paste0(sp_names[2], "_", sp_names[3])]] <- op_sp1[which(operon_sets[[2]] %in% operon_sets[[3]] )]
return(gr_sl)
}
}
lapply(compare_exact_operons_by_OGs(operons_hogs$Oki, operons_hogs$Osa, operons_hogs$Bar, sp_names=c("Oki", "Osa", "Bar")), head)## $Oki
## [1] "o1019" "o5455" "o6447" "o5089" "o5864" "o670"
##
## $Osa
## [1] "o4129" "o711" "o3825" "o6800" "o6267" "o2729"
##
## $Bar
## [1] "o2759" "o1227" "o5870" "o5763" "o2641" "o1601"Exact-matching operons, by HOGs
sp_fills <- c("Oki"="#e08d84", "Osa"="#4885c5", "Bar"="#9cdb8d")
sp_cols <- c("Oki"="#aa6d68", "Osa"="#396b99", "Bar"="#87b779")
# All operons at 500
compare_exact_operons_by_HOGs(operons_hogs$Oki, operons_hogs$Osa, operons_hogs$Bar, sp_names=c("Oki", "Osa", "Bar")) |> ggvenn::ggvenn(fill_color = unname(sp_fills)) + ggtitle("Conservation of all operons by HOGs\n(calcOperons window = 500)")
# Only operons above length 2
compare_exact_operons_by_HOGs(
operons_hogs$Oki |> plyranges::filter(n>2),
operons_hogs$Osa |> plyranges::filter(n>2),
operons_hogs$Bar |> plyranges::filter(n>2),
sp_names=c("Oki", "Osa", "Bar")
) |> ggvenn::ggvenn(fill_color = unname(sp_fills)) + ggtitle("Conservation of operons with >2 genes by HOGs\n(calcOperons window = 500)")
Exact-matching operons, by OGs
sp_fills <- c("Oki"="#e08d84", "Osa"="#4885c5", "Bar"="#9cdb8d")
sp_cols <- c("Oki"="#aa6d68", "Osa"="#396b99", "Bar"="#87b779")
# All operons at 500
compare_exact_operons_by_OGs(operons_hogs$Oki, operons_hogs$Osa, operons_hogs$Bar, sp_names=c("Oki", "Osa", "Bar")) |> ggvenn::ggvenn(fill_color = unname(sp_fills)) + ggtitle("Conservation of all operons by OGs\n(calcOperons window = 500)")
# Only operons above length 2
compare_exact_operons_by_OGs(
operons_hogs$Oki |> plyranges::filter(n>2),
operons_hogs$Osa |> plyranges::filter(n>2),
operons_hogs$Bar |> plyranges::filter(n>2),
sp_names=c("Oki", "Osa", "Bar")
) |> ggvenn::ggvenn(fill_color = unname(sp_fills)) + ggtitle("Conservation of operons with >2 genes by OGs\n(calcOperons window = 500)")
Operons calculated with different intergenic distances
# Add HOG annotations to every operon set with different intergenic distances
operons_hogs_diff_sizes <- SimpleList()
operons_hogs_diff_sizes$Oki <- sapply(operons_diff_sizes$Oki, function(op_set) {
annotate_operons_with_hogs(op_set, genes_hogs$Oki)
}) |> SimpleList()
operons_hogs_diff_sizes$Osa <- sapply(operons_diff_sizes$Osa, function(op_set) {
annotate_operons_with_hogs(op_set, genes_hogs$Osa)
}) |> SimpleList()
operons_hogs_diff_sizes$Bar <- sapply(operons_diff_sizes$Bar, function(op_set) {
annotate_operons_with_hogs(op_set, genes_hogs$Bar)
}) |> SimpleList()
# Operons with different window_sizes
op_plots <- lapply(1:length(operons_hogs_diff_sizes$Oki), function(i) {
cutoff <- operon_windows[i]
compare_exact_operons_by_HOGs(
operons_hogs_diff_sizes$Oki[[i]],
operons_hogs_diff_sizes$Osa[[i]],
operons_hogs_diff_sizes$Bar[[i]],
sp_names=c("Oki", "Osa", "Bar")
) |> ggvenn::ggvenn(fill_color=unname(sp_fills)) + ggtitle(paste0("Conservation of all operons by HOGs\n(calcOperons window = ", cutoff, ")") )
})
op_plots[[1]]
op_plots[[2]]
op_plots[[3]]
op_plots[[4]]
op_plots[[5]]
op_plots[[6]]
op_plots[[7]]
op_plots[[8]]
op_plots[[9]]
op_plots[[10]]
op_plots[[11]]
op_plots[[12]]
# Operons with different window_sizes
op_plots <- lapply(1:length(operons_hogs_diff_sizes$Oki), function(i) {
cutoff <- operon_windows[i]
compare_exact_operons_by_OGs(
operons_hogs_diff_sizes$Oki[[i]],
operons_hogs_diff_sizes$Osa[[i]],
operons_hogs_diff_sizes$Bar[[i]],
sp_names=c("Oki", "Osa", "Bar")
) |> ggvenn::ggvenn(fill_color=unname(sp_fills)) + ggtitle(paste0("Conservation of all operons by OGs\n(calcOperons window = ", cutoff, ")") )
})
op_plots[[1]]
op_plots[[2]]
op_plots[[3]]
op_plots[[4]]
op_plots[[5]]
op_plots[[6]]
op_plots[[7]]
op_plots[[8]]
op_plots[[9]]
op_plots[[10]]
op_plots[[11]]
op_plots[[12]]
Operons with >5 genes
# Operons with different window_sizes and >5 genes
# Note that every cutoff >5 results in an error.
op_plots <- lapply(5:length(operons_hogs_diff_sizes$Oki), function(i) {
cutoff <- operon_windows[i]
compare_exact_operons_by_HOGs(
operons_hogs_diff_sizes$Oki[[i]] |> plyranges::filter(n>4),
operons_hogs_diff_sizes$Osa[[i]] |> plyranges::filter(n>4),
operons_hogs_diff_sizes$Bar[[i]] |> plyranges::filter(n>4),
sp_names=c("Oki", "Osa", "Bar")
) |> ggvenn::ggvenn(fill_color=unname(sp_fills)) + ggtitle(paste0("Conservation of operons with >= 5 genes by HOGs\n(calcOperons window = ", cutoff, ")") )
})
op_plots[[1]]
op_plots[[2]]
op_plots[[3]]
op_plots[[4]]
op_plots[[5]]
op_plots[[6]]
op_plots[[7]]
op_plots[[8]]
# Operons with different window_sizes
op_plots <- lapply(5:length(operons_hogs_diff_sizes$Oki), function(i) {
cutoff <- operon_windows[i]
compare_exact_operons_by_OGs(
operons_hogs_diff_sizes$Oki[[i]] |> plyranges::filter(n>4),
operons_hogs_diff_sizes$Osa[[i]] |> plyranges::filter(n>4),
operons_hogs_diff_sizes$Bar[[i]] |> plyranges::filter(n>4),
sp_names=c("Oki", "Osa", "Bar")
) |> ggvenn::ggvenn(fill_color=unname(sp_fills)) + ggtitle(paste0("Conservation of operons with >= 5 genes by OGs\n(calcOperons window = ", cutoff, ")") )
})
op_plots[[1]]
op_plots[[2]]
op_plots[[3]]
op_plots[[4]]
op_plots[[5]]
op_plots[[6]]
op_plots[[7]]
op_plots[[8]]
Verifying that the HOG annotation functions work
# Use 9-gene operon to check
hog_of_genes(pho, "Oki", unlist(subsetByOverlaps(operons$Oki, GRanges("PAR:9771465-9794560"))$gene_id))## [1] "N19.HOG0002739" "N19.HOG0006639" "N19.HOG0007771" "N19.HOG0011738"
## [5] "N19.HOG0008872" "N19.HOG0006520" "N19.HOG0007593" "N19.HOG0008628"
## [9] "N19.HOG0005101"
hog_of_genes(pho, "Osa", unlist(subsetByOverlaps(operons$Osa, GRanges("PAR:9478171-9497279"))$gene_id))## [1] "N19.HOG0002739" "N19.HOG0006639" "N19.HOG0007771" "N19.HOG0011738"
## [5] "N19.HOG0008872" "N19.HOG0006520" "N19.HOG0007593" "N19.HOG0008628"
## [9] "N19.HOG0005101"
hog_of_genes(pho, "Bar", unlist(subsetByOverlaps(operons$Bar, GRanges("PAR:8766290-8785222"))$gene_id)) # Notice that it is reversed.## [1] "N19.HOG0005101" "N19.HOG0008628" "N19.HOG0007593" "N19.HOG0006520"
## [5] "N19.HOG0008872" "N19.HOG0011738" "N19.HOG0007771" "N19.HOG0006639"
## [9] "N19.HOG0002739"
hog_of_genes(pho, "Bar", unlist(subsetByOverlaps(operons$Bar, GRanges("PAR:8766290-8785222"))$gene_id)) |> rev()## [1] "N19.HOG0002739" "N19.HOG0006639" "N19.HOG0007771" "N19.HOG0011738"
## [5] "N19.HOG0008872" "N19.HOG0006520" "N19.HOG0007593" "N19.HOG0008628"
## [9] "N19.HOG0005101"
hog_of_genes(pho, "Oki", unlist(subsetByOverlaps(operons_hogs$Oki, GRanges("PAR:9771465-9794560"))$gene_id))## [1] "N19.HOG0002739" "N19.HOG0006639" "N19.HOG0007771" "N19.HOG0011738"
## [5] "N19.HOG0008872" "N19.HOG0006520" "N19.HOG0007593" "N19.HOG0008628"
## [9] "N19.HOG0005101"
hog_of_genes(pho, "Osa", unlist(subsetByOverlaps(operons_hogs$Osa, GRanges("PAR:9478171-9497279"))$gene_id))## [1] "N19.HOG0002739" "N19.HOG0006639" "N19.HOG0007771" "N19.HOG0011738"
## [5] "N19.HOG0008872" "N19.HOG0006520" "N19.HOG0007593" "N19.HOG0008628"
## [9] "N19.HOG0005101"
hog_of_genes(pho, "Bar", unlist(subsetByOverlaps(operons_hogs$Bar, GRanges("PAR:8766290-8785222"))$gene_id)) |> rev()## [1] "N19.HOG0002739" "N19.HOG0006639" "N19.HOG0007771" "N19.HOG0011738"
## [5] "N19.HOG0008872" "N19.HOG0006520" "N19.HOG0007593" "N19.HOG0008628"
## [9] "N19.HOG0005101"
vop <- compare_exact_operons_by_HOGs(operons_hogs$Oki, operons_hogs$Osa, operons_hogs$Bar, sp_names=c("Oki", "Osa", "Bar"), return_what = "GRanges")
vop$Oki_Osa[order(vop$Oki_Osa$n)]## GRanges object with 361 ranges and 4 metadata columns:
## seqnames ranges strand | n gene_id
## <Rle> <IRanges> <Rle> | <integer> <CharacterList>
## o6 chr1 556381-564207 + | 2 g57,g58
## o28 chr1 1032816-1037304 + | 2 g185,g186
## o47 chr1 1411317-1415338 - | 2 g299,g300
## o66 chr1 1778107-1782645 + | 2 g398,g399
## o73 chr1 1946257-1949153 + | 2 g441,g442
## ... ... ... ... . ... ...
## o1477 chr2 14654786-14660952 - | 5 g8136,g8137,g8138,...
## o1494 chr2 15017564-15028726 - | 5 g8229,g8230,g8231,...
## o2296 PAR 14516577-14532004 - | 5 g12593,g12594,g12595,...
## o1983 PAR 8927548-8937581 + | 7 g10913,g10914,g10915,...
## o2032 PAR 9771692-9794368 - | 9 g11184,g11185,g11186,...
## HOGs
## <CharacterList>
## o6 N19.HOG0001417,N19.HOG0011241
## o28 N19.HOG0001993,N19.HOG0007627
## o47 N19.HOG0014309,N19.HOG0016757
## o66 N19.HOG0011463,N19.HOG0011463
## o73 N19.HOG0012278,N19.HOG0001081
## ... ...
## o1477 N19.HOG0011535,N19.HOG0006600,N19.HOG0009061,...
## o1494 N19.HOG0004614,N19.HOG0006727,N19.HOG0007192,...
## o2296 N19.HOG0008944,N19.HOG0007923,N19.HOG0008700,...
## o1983 N19.HOG0005575,N19.HOG0006199,N19.HOG0006200,...
## o2032 N19.HOG0002739,N19.HOG0006639,N19.HOG0007771,...
## OGs
## <CharacterList>
## o6 OG0000099,OG0007958
## o28 OG0000174,OG0003139
## o47 OG0014618,OG0023250
## o66 OG0008436,OG0008436
## o73 OG0010185,OG0000064
## ... ...
## o1477 OG0008802,OG0002302,OG0004621,...
## o1494 OG0001059,OG0002391,OG0002773,...
## o2296 OG0004469,OG0003437,OG0004215,...
## o1983 OG0001568,OG0001992,OG0001992,...
## o2032 OG0000338,OG0002322,OG0003272,...
## -------
## seqinfo: 19 sequences from OKI2018.I69 genome
vop$Oki_Bar[order(vop$Oki_Bar$n)]## GRanges object with 364 ranges and 4 metadata columns:
## seqnames ranges strand | n gene_id
## <Rle> <IRanges> <Rle> | <integer> <CharacterList>
## o6 chr1 556381-564207 + | 2 g57,g58
## o73 chr1 1946257-1949153 + | 2 g441,g442
## o149 chr1 3339416-3343257 - | 2 g873,g874
## o162 chr1 3611586-3621014 - | 2 g948,g949
## o170 chr1 3810840-3814708 + | 2 g997,g998
## ... ... ... ... . ... ...
## o510 chr1 10712222-10726400 - | 6 g2881,g2882,g2883,...
## o1286 chr2 11091606-11104011 + | 6 g7131,g7132,g7133,...
## o1430 chr2 13688607-13693064 - | 6 g7856,g7857,g7858,...
## o1862 PAR 6846146-6864767 + | 6 g10302,g10303,g10305,...
## o2032 PAR 9771692-9794368 - | 9 g11184,g11185,g11186,...
## HOGs
## <CharacterList>
## o6 N19.HOG0001417,N19.HOG0011241
## o73 N19.HOG0012278,N19.HOG0001081
## o149 N19.HOG0007680,N19.HOG0013721
## o162 N19.HOG0007583,N19.HOG0001073
## o170 N19.HOG0003946,N19.HOG0008416
## ... ...
## o510 N19.HOG0004919,N19.HOG0010221,N19.HOG0010176,...
## o1286 N19.HOG0007926,N19.HOG0010073,N19.HOG0006123,...
## o1430 N19.HOG0008326,N19.HOG0008829,N19.HOG0009083,...
## o1862 N19.HOG0006284,N19.HOG0006903,N19.HOG0009116,...
## o2032 N19.HOG0002739,N19.HOG0006639,N19.HOG0007771,...
## OGs
## <CharacterList>
## o6 OG0000099,OG0007958
## o73 OG0010185,OG0000064
## o149 OG0003181,OG0013143
## o162 OG0003110,OG0000062
## o170 OG0000758,OG0003929
## ... ...
## o510 OG0001202,OG0006034,OG0005977,...
## o1286 OG0003439,OG0005908,OG0001947,...
## o1430 OG0003863,OG0004379,OG0004638,...
## o1862 OG0002053,OG0002526,OG0004664,...
## o2032 OG0000338,OG0002322,OG0003272,...
## -------
## seqinfo: 19 sequences from OKI2018.I69 genome
vop$Osa_Bar[order(vop$Osa_Bar$n)]## GRanges object with 526 ranges and 4 metadata columns:
## seqnames ranges strand | n gene_id
## <Rle> <IRanges> <Rle> | <integer> <CharacterList>
## o11 chr1 678279-684629 + | 2 g88,g89
## o12 chr1 690702-698395 + | 2 g92,g93
## o46 chr1 1404498-1408128 - | 2 g297,g298
## o47 chr1 1411317-1415338 - | 2 g299,g300
## o58 chr1 1645443-1650263 + | 2 g366,g367
## ... ... ... ... . ... ...
## o2238 PAR 13301707-13313964 + | 8 g12262,g12263,g12264,...
## o2142 PAR 11479626-11500132 + | 9 g11753,g11754,g11755,...
## o2268 PAR 13945318-13961717 - | 9 g12438,g12439,g12440,...
## o2373 PAR 15990875-16016623 - | 9 g13011,g13012,g13013,...
## o456 chr1 9809914-9836205 + | 10 g2620,g2621,g2622,...
## HOGs
## <CharacterList>
## o11 N19.HOG0005846,N19.HOG0005848
## o12 N19.HOG0017039,N19.HOG0002381
## o46 N19.HOG0002790,N19.HOG0013320
## o47 N19.HOG0014309,N19.HOG0016757
## o58 N19.HOG0012351,NA
## ... ...
## o2238 N19.HOG0002703,NA,N19.HOG0011869,...
## o2142 N19.HOG0008363,N19.HOG0002370,N19.HOG0008862,...
## o2268 N19.HOG0008224,N19.HOG0008701,N19.HOG0007711,...
## o2373 N19.HOG0009434,N19.HOG0007065,N19.HOG0007064,...
## o456 N19.HOG0000532,N19.HOG0007117,N19.HOG0010720,...
## OGs
## <CharacterList>
## o11 OG0001752,OG0001752
## o12 OG0025413,OG0000253
## o46 OG0000345,OG0012752
## o47 OG0014618,OG0023250
## o58 OG0010618,NA
## ... ...
## o2238 OG0000331,NA,OG0009415,...
## o2142 OG0003888,OG0000251,OG0004402,...
## o2268 OG0003727,OG0004216,OG0003230,...
## o2373 OG0005008,OG0002653,OG0002653,...
## o456 OG0000018,OG0002689,OG0006872,...
## -------
## seqinfo: 19 sequences from OKI2018.I69 genomeInexact-matching operons
In order to do inexact matching between operons, one can imagine genes as “words” and operons as “phrases”, then measure the edit distance between phrases.
hog_ids_to_utf8 <- function(og, sp1, sp2, sp3, sp_names=c("Oki", "Osa", "Bar")) {
sp1$sp_id <- sp2$sp_id <- sp3$sp_id <- NA
# First species' words
sp1$sp_id[which(!is.na(sp1$HOG))] <- sp1$HOG[which(!is.na(sp1$HOG))]
sp1$sp_id[which(is.na(sp1$HOG))] <- paste0(sp_names[[1]], "__", sp1$gene_id[which(is.na(sp1$HOG))])
# Second species' words
sp2$sp_id[which(!is.na(sp2$HOG))] <- sp2$HOG[which(!is.na(sp2$HOG))]
sp2$sp_id[which(is.na(sp2$HOG))] <- paste0(sp_names[[2]], "__", sp2$gene_id[which(is.na(sp2$HOG))])
# Third species' words
sp3$sp_id[which(!is.na(sp3$HOG))] <- sp3$HOG[which(!is.na(sp3$HOG))]
sp3$sp_id[which(is.na(sp3$HOG))] <- paste0(sp_names[[3]], "__", sp3$gene_id[which(is.na(sp3$HOG))])
# Concatenate all the words needed to describe all species into one dataframe
all_words <- data.frame(original_word=unique(c(sp1$sp_id, sp2$sp_id, sp3$sp_id)))
all_words$int <- 1:nrow(all_words)
all_words$utf_word <- lapply(all_words$int, function(x) intToUtf8(x)) |> unlist()
# Now, annotate GRanges with the UTF-encoded words
sp1$utf_word <- all_words$utf_word[match(sp1$sp_id, all_words$original_word)]
sp2$utf_word <- all_words$utf_word[match(sp2$sp_id, all_words$original_word)]
sp3$utf_word <- all_words$utf_word[match(sp3$sp_id, all_words$original_word)]
#
g <- list(sp1, sp2, sp3) |> SimpleList()
names(g) <- sp_names
return(g)
}
genes_hogs_utf <- hog_ids_to_utf8(pho, genes_hogs$Oki, genes_hogs$Osa, genes_hogs$Bar)
# Annotate operons GR with UTF-8 words
annotate_operons_with_hogs_utf <- function(op_gr, hog_utf_gr) {
if(is.null(names(op_gr))){
names(op_gr) <- paste0("o", 1:length(op_gr))
}
op_gr_annot <- op_gr$gene_id |> as.data.frame()
op_gr_annot$HOG <- hog_utf_gr$HOG[match(op_gr_annot$value, hog_utf_gr$gene_id)]
op_gr_annot$OG <- hog_utf_gr$OG[match(op_gr_annot$value, hog_utf_gr$gene_id)]
op_gr_annot$utf_word <- hog_utf_gr$utf_word[match(op_gr_annot$value, hog_utf_gr$gene_id)]
op_hogs <- split(op_gr_annot$HOG, op_gr_annot$group)
names(op_hogs) <- names(op_gr)
op_gr$HOGs <- CharacterList(op_hogs)
op_ogs <- split(op_gr_annot$OG, op_gr_annot$group)
names(op_ogs) <- names(op_gr)
op_gr$OGs <- CharacterList(op_ogs)
op_utfs <- split(op_gr_annot$utf_word, op_gr_annot$group)
names(op_utfs) <- names(op_gr)
op_gr$utf_words <- CharacterList(op_utfs)
op_gr
}
operons_hogs_utf <- SimpleList()
operons_hogs_utf$Oki <- annotate_operons_with_hogs_utf(operons$Oki, genes_hogs_utf$Oki)
operons_hogs_utf$Osa <- annotate_operons_with_hogs_utf(operons$Osa, genes_hogs_utf$Osa)
operons_hogs_utf$Bar <- annotate_operons_with_hogs_utf(operons$Bar, genes_hogs_utf$Bar)
stringdist_of_operon_against_all <- function(op_sp1, opl_sp2, nthread=1, method="lv") {
all_distances <- lapply(opl_sp2, function(o) {
stringdist::stringdist(op_sp1, o, method=method, nthread = nthread)
}) |> unlist()
all_distances
}
stringdist_of_operon_against_all(hog_characterlist_to_hog_id(operons_hogs_utf$Oki, cl_name = "utf_words")[1], hog_characterlist_to_hog_id(operons_hogs_utf$Osa, cl_name="utf_words")) |> head()## [1] 5 2 2 8 2 5
stringdist_of_allop_vs_allop <- function(opl_sp1, opl_sp2, nthread=1, method="lv", mc.cores=1) {
all_by_all <- parallel::mclapply(mc.cores=mc.cores, opl_sp1, function(o) {
stringdist_of_operon_against_all(o, opl_sp2, nthread=nthread, method=method)
})
all_by_all
}
lapply(stringdist_of_allop_vs_allop(hog_characterlist_to_hog_id(operons_hogs_utf$Oki, cl_name = "utf_words")[1:3], hog_characterlist_to_hog_id(operons_hogs_utf$Osa, cl_name="utf_words")), head)## [[1]]
## [1] 5 2 2 8 2 5
##
## [[2]]
## [1] 5 2 2 8 2 5
##
## [[3]]
## [1] 5 2 2 8 2 5
#tmpsd <- stringdist_of_allop_vs_allop(hog_characterlist_to_hog_id(operons_hogs_utf$Oki, cl_name = "utf_words"), hog_characterlist_to_hog_id(operons_hogs_utf$Osa, cl_name="utf_words"), mc.cores = 4)
stringdist_all_by_all_test <- function(list_of_all_by_all_stringdists, max_distance=1){
minimums <- lapply(list_of_all_by_all_stringdists, min) |> unlist()
return(which(minimums <= max_distance))
}
stringdist_of_allop_vs_allop(hog_characterlist_to_hog_id(operons_hogs_utf$Oki, cl_name = "utf_words")[1:10], hog_characterlist_to_hog_id(operons_hogs_utf$Osa, cl_name="utf_words"), mc.cores = 4) |> stringdist_all_by_all_test()## [1] 6 8
compare_inexact_operons_by_stringdist <- function(op_sp1, op_sp2, op_sp3, sp_names=c("Oki", "Osa", "Bar"), method="lv", max_distance=1, mc.cores = 1, min_size=3) {
# Don't let the function be run on an un-annotated operons() GRanges
stopifnot(length(op_sp1$utf_words)>0)
# Dropping X genes from a comparison of one operon to another and treating them
# as equal does not make much sense for operons that are too small.
# So, only look at operons of an appropriate size when max_distance is
# >0.
stopifnot(min_size-max_distance>=2)
op_sp1 <- op_sp1[op_sp1$n >= min_size]
op_sp2 <- op_sp2[op_sp2$n >= min_size]
op_sp3 <- op_sp3[op_sp3$n >= min_size]
operon_sets <- list(
hog_characterlist_to_hog_id(op_sp1, cl_name = "utf_words", sp=sp_names[[1]]) |> unique(),
hog_characterlist_to_hog_id(op_sp2, cl_name = "utf_words", sp=sp_names[[2]]) |> unique(),
hog_characterlist_to_hog_id(op_sp3, cl_name = "utf_words", sp=sp_names[[3]]) |> unique()
) |> SimpleList()
names(operon_sets) <- sp_names
# Make a list of unique operon IDs combining all species' operons.
operon_ids <- paste0("o", 1:length(unique(unlist(operon_sets))))
all_operons <- unique(unlist(operon_sets))
names(all_operons) <- operon_ids
# Rename operons by shared coordinates
renamed_operons <- sapply(operon_sets, function(o) {
names(o) <- names(all_operons[match(o, all_operons)])
o
}) |> SimpleList()
# With renamed operons, we can calculate string distances using UTF-8 encoded words.
# Need sp1 operon name for later, so iterate over names.
dists_sp1_sp2 <- stringdist_of_allop_vs_allop(renamed_operons[[sp_names[1]]], renamed_operons[[sp_names[2]]], method=method, mc.cores=mc.cores)
test_sp1_sp2 <- stringdist_all_by_all_test(dists_sp1_sp2)
dists_sp2_sp3 <- stringdist_of_allop_vs_allop(renamed_operons[[sp_names[2]]], renamed_operons[[sp_names[3]]], method=method, mc.cores=mc.cores)
test_sp2_sp3 <- stringdist_all_by_all_test(dists_sp2_sp3)
dists_sp1_sp3 <- stringdist_of_allop_vs_allop(renamed_operons[[sp_names[1]]], renamed_operons[[sp_names[3]]], method=method, mc.cores=mc.cores)
test_sp1_sp3 <- stringdist_all_by_all_test(dists_sp1_sp3)
result <- list()
result[[sp_names[1]]] <- names(renamed_operons[[sp_names[1]]]) |> unique()
result[[sp_names[2]]] <- names(renamed_operons[[sp_names[2]]]) |> unique()
result[[sp_names[3]]] <- names(renamed_operons[[sp_names[3]]]) |> unique()
result$exact_sp1_sp2 <- result[[sp_names[1]]][ result[[sp_names[1]]] %in% result[[sp_names[2]]] ]
result$exact_sp2_sp3 <- result[[sp_names[2]]][ result[[sp_names[2]]] %in% result[[sp_names[3]]] ]
result$exact_sp1_sp3 <- result[[sp_names[1]]][ result[[sp_names[1]]] %in% result[[sp_names[3]]] ]
result$exact_sp1_sp2_sp3 <- intersect(intersect(result$exact_sp1_sp2, result$exact_sp2_sp3 ), result$exact_sp1_sp3)
result$inexact_sp1_sp2 <- names(test_sp1_sp2)
result$inexact_sp2_sp3 <- names(test_sp2_sp3)
result$inexact_sp1_sp3 <- names(test_sp1_sp3)
result$inexact_sp1_sp2_sp3 <- intersect(intersect(result$inexact_sp1_sp2, result$inexact_sp2_sp3 ), result$inexact_sp1_sp3)
result
}
inexact_operons <- compare_inexact_operons_by_stringdist(operons_hogs_utf$Oki, operons_hogs_utf$Osa, operons_hogs_utf$Bar, sp_names=c("Oki", "Osa", "Bar"), max_distance = 1, min_size=3, mc.cores=4)
inexact_operons_tibble_ggvenn <- data.frame(operons=unique(unlist(inexact_operons))) |> dplyr::as_tibble()
inexact_operons_tibble_ggvenn$Oki <- inexact_operons_tibble_ggvenn$operons %in% inexact_operons$Oki
inexact_operons_tibble_ggvenn$Osa <- inexact_operons_tibble_ggvenn$operons %in% inexact_operons$Osa
inexact_operons_tibble_ggvenn$Bar <- inexact_operons_tibble_ggvenn$operons %in% inexact_operons$Bar
inexact_operons_tibble_ggvenn$Oki_Osa <- inexact_operons_tibble_ggvenn$operons %in% inexact_operons$inexact_sp1_sp2
inexact_operons_tibble_ggvenn$Oki_Bar <- inexact_operons_tibble_ggvenn$operons %in% inexact_operons$inexact_sp1_sp3
inexact_operons_tibble_ggvenn$Osa_Bar <- inexact_operons_tibble_ggvenn$operons %in% inexact_operons$inexact_sp2_sp3
inexact_operons_tibble_ggvenn$Oki_Osa_Bar <- inexact_operons_tibble_ggvenn$operons %in% inexact_operons$inexact_sp1_sp2_sp3
apply(inexact_operons_tibble_ggvenn[,2:8], 2, table)## Oki Osa Bar Oki_Osa Oki_Bar Osa_Bar Oki_Osa_Bar
## FALSE 1705 1858 1955 2776 2764 2715 2845
## TRUE 1178 1025 928 107 119 168 38## Oki Osa Bar Oki_Osa Oki_Bar Osa_Bar
## 2883 2883 2883 2883 2883 2883
## Oki_Osa_Bar
## 2883
#eulerr::euler(c("Oki"=1178, "Osa"=1025, "Bar"=928, "Oki&Osa"=107, "Oki&Bar"=119, "Osa&Bar"=168, "Oki&Osa&Bar"=38)) |> plot(quantities=TRUE, main="Number of operons >= 3 genes, with >=1 gene different\ncalcOperons window=500bp", fills=sp_fills, col=sp_cols)
eulerr::euler(c(
"Oki"=inexact_operons_tibble_ggvenn |> filter(Oki==TRUE, Oki_Osa==FALSE, Oki_Osa==FALSE, Osa_Bar==FALSE, Oki_Bar==FALSE, Oki_Osa_Bar==FALSE) |> nrow(),
"Osa"=inexact_operons_tibble_ggvenn |> filter(Osa==TRUE, Oki_Osa==FALSE, Oki_Osa==FALSE, Osa_Bar==FALSE, Oki_Bar==FALSE, Oki_Osa_Bar==FALSE) |> nrow(),
"Bar"=inexact_operons_tibble_ggvenn |> filter(Bar==TRUE, Oki_Osa==FALSE, Oki_Osa==FALSE, Osa_Bar==FALSE, Oki_Bar==FALSE, Oki_Osa_Bar==FALSE) |> nrow(),
"Oki&Osa"=inexact_operons_tibble_ggvenn |> filter(Oki_Osa==TRUE, Oki_Osa_Bar==FALSE) |> nrow(),
"Oki&Bar"=inexact_operons_tibble_ggvenn |> filter(Oki_Bar==TRUE, Oki_Osa_Bar==FALSE) |> nrow(),
"Osa&Bar"=inexact_operons_tibble_ggvenn |> filter(Osa_Bar==TRUE, Oki_Osa_Bar==FALSE) |> nrow(),
"Oki&Osa&Bar"=inexact_operons_tibble_ggvenn |> filter(Oki_Osa_Bar==TRUE) |> nrow()
)
) |> plot(main="Number of operons >= 3 genes (HOGs), with >=1 gene different\ncalcOperons window=500bp", fills=sp_fills, col=sp_cols, quantities=list(type = c('counts',"percent")))
og_ids_to_utf8 <- function(og, sp1, sp2, sp3, sp_names=c("Oki", "Osa", "Bar")) {
sp1$sp_id <- sp2$sp_id <- sp3$sp_id <- NA
# First species' words
sp1$sp_id[which(!is.na(sp1$OG))] <- sp1$OG[which(!is.na(sp1$OG))]
sp1$sp_id[which(is.na(sp1$OG))] <- paste0(sp_names[[1]], "__", sp1$gene_id[which(is.na(sp1$OG))])
# Second species' words
sp2$sp_id[which(!is.na(sp2$OG))] <- sp2$OG[which(!is.na(sp2$OG))]
sp2$sp_id[which(is.na(sp2$OG))] <- paste0(sp_names[[2]], "__", sp2$gene_id[which(is.na(sp2$OG))])
# Third species' words
sp3$sp_id[which(!is.na(sp3$OG))] <- sp3$OG[which(!is.na(sp3$OG))]
sp3$sp_id[which(is.na(sp3$OG))] <- paste0(sp_names[[3]], "__", sp3$gene_id[which(is.na(sp3$OG))])
# Concatenate all the words needed to describe all species into one dataframe
all_words <- data.frame(original_word=unique(c(sp1$sp_id, sp2$sp_id, sp3$sp_id)))
all_words$int <- 1:nrow(all_words)
all_words$utf_word <- lapply(all_words$int, function(x) intToUtf8(x)) |> unlist()
# Now, annotate GRanges with the UTF-encoded words
sp1$utf_word <- all_words$utf_word[match(sp1$sp_id, all_words$original_word)]
sp2$utf_word <- all_words$utf_word[match(sp2$sp_id, all_words$original_word)]
sp3$utf_word <- all_words$utf_word[match(sp3$sp_id, all_words$original_word)]
#
g <- list(sp1, sp2, sp3) |> SimpleList()
names(g) <- sp_names
return(g)
}
genes_ogs_utf <- og_ids_to_utf8(pho, genes_hogs$Oki, genes_hogs$Osa, genes_hogs$Bar)
# Annotate operons GR with UTF-8 words
annotate_operons_with_ogs_utf <- function(op_gr, og_utf_gr) {
if(is.null(names(op_gr))){
names(op_gr) <- paste0("o", 1:length(op_gr))
}
op_gr_annot <- op_gr$gene_id |> as.data.frame()
op_gr_annot$HOG <- og_utf_gr$HOG[match(op_gr_annot$value, og_utf_gr$gene_id)]
op_gr_annot$OG <- og_utf_gr$OG[match(op_gr_annot$value, og_utf_gr$gene_id)]
op_gr_annot$utf_word <- og_utf_gr$utf_word[match(op_gr_annot$value, og_utf_gr$gene_id)]
op_hogs <- split(op_gr_annot$HOG, op_gr_annot$group)
names(op_hogs) <- names(op_gr)
op_gr$HOGs <- CharacterList(op_hogs)
op_ogs <- split(op_gr_annot$OG, op_gr_annot$group)
names(op_ogs) <- names(op_gr)
op_gr$OGs <- CharacterList(op_ogs)
op_utfs <- split(op_gr_annot$utf_word, op_gr_annot$group)
names(op_utfs) <- names(op_gr)
op_gr$utf_words <- CharacterList(op_utfs)
op_gr
}
operons_ogs_utf <- SimpleList()
operons_ogs_utf$Oki <- annotate_operons_with_ogs_utf(operons$Oki, genes_ogs_utf$Oki)
operons_ogs_utf$Osa <- annotate_operons_with_ogs_utf(operons$Osa, genes_ogs_utf$Osa)
operons_ogs_utf$Bar <- annotate_operons_with_ogs_utf(operons$Bar, genes_ogs_utf$Bar)
stringdist_of_operon_against_all(hog_characterlist_to_hog_id(operons_ogs_utf$Oki, cl_name = "utf_words")[1], hog_characterlist_to_hog_id(operons_ogs_utf$Osa, cl_name="utf_words")) |> head()## [1] 5 2 2 8 2 5
stringdist_of_allop_vs_allop <- function(opl_sp1, opl_sp2, nthread=1, method="lv", mc.cores=1) {
all_by_all <- parallel::mclapply(mc.cores=mc.cores, opl_sp1, function(o) {
stringdist_of_operon_against_all(o, opl_sp2, nthread=nthread, method=method)
})
all_by_all
}
lapply(stringdist_of_allop_vs_allop(hog_characterlist_to_hog_id(operons_ogs_utf$Oki, cl_name = "utf_words")[1:3], hog_characterlist_to_hog_id(operons_ogs_utf$Osa, cl_name="utf_words")), head)## [[1]]
## [1] 5 2 2 8 2 5
##
## [[2]]
## [1] 5 2 2 8 2 5
##
## [[3]]
## [1] 5 2 2 8 2 5
#tmpsd <- stringdist_of_allop_vs_allop(hog_characterlist_to_hog_id(operons_hogs_utf$Oki, cl_name = "utf_words"), hog_characterlist_to_hog_id(operons_hogs_utf$Osa, cl_name="utf_words"), mc.cores = 4)
stringdist_of_allop_vs_allop(hog_characterlist_to_hog_id(operons_ogs_utf$Oki, cl_name = "utf_words")[1:10], hog_characterlist_to_hog_id(operons_ogs_utf$Osa, cl_name="utf_words"), mc.cores = 4) |> stringdist_all_by_all_test()## [1] 6 8
inexact_operons_ogs <- compare_inexact_operons_by_stringdist(operons_ogs_utf$Oki, operons_ogs_utf$Osa, operons_ogs_utf$Bar, sp_names=c("Oki", "Osa", "Bar"), max_distance = 1, min_size=3, mc.cores=4)
inexact_operons_tibble_ggvenn2 <- data.frame(operons=unique(unlist(inexact_operons_ogs))) |> dplyr::as_tibble()
inexact_operons_tibble_ggvenn2$Oki <- inexact_operons_tibble_ggvenn2$operons %in% inexact_operons_ogs$Oki
inexact_operons_tibble_ggvenn2$Osa <- inexact_operons_tibble_ggvenn2$operons %in% inexact_operons_ogs$Osa
inexact_operons_tibble_ggvenn2$Bar <- inexact_operons_tibble_ggvenn2$operons %in% inexact_operons_ogs$Bar
inexact_operons_tibble_ggvenn2$Oki_Osa <- inexact_operons_tibble_ggvenn2$operons %in% inexact_operons_ogs$inexact_sp1_sp2
inexact_operons_tibble_ggvenn2$Oki_Bar <- inexact_operons_tibble_ggvenn2$operons %in% inexact_operons_ogs$inexact_sp1_sp3
inexact_operons_tibble_ggvenn2$Osa_Bar <- inexact_operons_tibble_ggvenn2$operons %in% inexact_operons_ogs$inexact_sp2_sp3
inexact_operons_tibble_ggvenn2$Oki_Osa_Bar <- inexact_operons_tibble_ggvenn2$operons %in% inexact_operons_ogs$inexact_sp1_sp2_sp3
apply(inexact_operons_tibble_ggvenn2[,2:8], 2, table)## Oki Osa Bar Oki_Osa Oki_Bar Osa_Bar Oki_Osa_Bar
## FALSE 1689 1842 1939 2749 2737 2686 2828
## TRUE 1178 1025 928 118 130 181 39## Oki Osa Bar Oki_Osa Oki_Bar Osa_Bar
## 2867 2867 2867 2867 2867 2867
## Oki_Osa_Bar
## 2867
#eulerr::euler(c("Oki"=1178, "Osa"=1025, "Bar"=928, "Oki&Osa"=118, "Oki&Bar"=130, "Osa&Bar"=181, "Oki&Osa&Bar"=39)) |> plot(quantities=TRUE, main="Number of operons >= 3 genes (OGs), with >=1 gene different\ncalcOperons window=500bp", fills=sp_fills, col=sp_cols)
eulerr::euler(c(
"Oki"=inexact_operons_tibble_ggvenn2 |> filter(Oki==TRUE, Oki_Osa==FALSE, Oki_Osa==FALSE, Osa_Bar==FALSE, Oki_Bar==FALSE, Oki_Osa_Bar==FALSE) |> nrow(),
"Osa"=inexact_operons_tibble_ggvenn2 |> filter(Osa==TRUE, Oki_Osa==FALSE, Oki_Osa==FALSE, Osa_Bar==FALSE, Oki_Bar==FALSE, Oki_Osa_Bar==FALSE) |> nrow(),
"Bar"=inexact_operons_tibble_ggvenn2 |> filter(Bar==TRUE, Oki_Osa==FALSE, Oki_Osa==FALSE, Osa_Bar==FALSE, Oki_Bar==FALSE, Oki_Osa_Bar==FALSE) |> nrow(),
"Oki&Osa"=inexact_operons_tibble_ggvenn2 |> filter(Oki_Osa==TRUE, Oki_Osa_Bar==FALSE) |> nrow(),
"Oki&Bar"=inexact_operons_tibble_ggvenn2 |> filter(Oki_Bar==TRUE, Oki_Osa_Bar==FALSE) |> nrow(),
"Osa&Bar"=inexact_operons_tibble_ggvenn2 |> filter(Osa_Bar==TRUE, Oki_Osa_Bar==FALSE) |> nrow(),
"Oki&Osa&Bar"=inexact_operons_tibble_ggvenn2 |> filter(Oki_Osa_Bar==TRUE) |> nrow()
)
) |> plot(main="Number of operons >= 3 genes (OGs), with >=1 gene different\ncalcOperons window=500bp", fills=sp_fills, col=sp_cols, quantities=list(type = c('counts',"percent")))
Operon swapping
Are genes in operons more or less likely to end up in another operon?
# Number of genes
n_genes <- length(genes_hogs$Oki)
# Number of operons
n_operons <- length(operons_hogs$Oki)
# Number of genes in operons
n_genes_in_operons <- length(unlist(operons_hogs$Oki$gene_id))
# Number of genes in HOGs
n_genes_in_hogs <- length(na.omit(genes_hogs$Oki$HOG))
# Number of genes in operons in HOGs
n_genes_in_operons_in_hogs <- length(na.omit(unlist(operons_hogs$Oki$HOGs)))
# Fraction of genes with HOGs
n_genes_in_hogs/n_genes## [1] 0.9662252
# Fraction of genes in operons with HOGs
n_genes_in_operons_in_hogs/n_genes_in_operons## [1] 0.9669286
# This is not substantially different. The number of genes assigned to HOGs is not very different in vs. out of operons.
# Subset to genes with shared HOGs
oki_hogs <- genes_hogs_utf$Oki[genes_hogs_utf$Oki$HOG %in% genes_hogs_utf$Osa$HOG]
oki_hogs <- oki_hogs[oki_hogs$HOG %in% genes_hogs_utf$Bar$HOG]
in_operon_oki <- oki_hogs[ oki_hogs$gene_id %in% unlist(operons_hogs_utf$Oki$gene_id)]
out_operon_oki <- oki_hogs[!oki_hogs$gene_id %in% unlist(operons_hogs_utf$Oki$gene_id)]
osa_hogs <- genes_hogs_utf$Osa[genes_hogs_utf$Osa$HOG %in% genes_hogs_utf$Oki$HOG]
osa_hogs <- osa_hogs[osa_hogs$HOG %in% genes_hogs_utf$Bar$HOG]
in_operon_osa <- osa_hogs[ osa_hogs$gene_id %in% unlist(operons_hogs_utf$Osa$gene_id)]
out_operon_osa <- osa_hogs[!osa_hogs$gene_id %in% unlist(operons_hogs_utf$Osa$gene_id)]
bar_hogs <- genes_hogs_utf$Bar[genes_hogs_utf$Bar$HOG %in% genes_hogs_utf$Oki$HOG]
bar_hogs <- bar_hogs[bar_hogs$HOG %in% genes_hogs_utf$Oki$HOG]
in_operon_bar <- bar_hogs[ bar_hogs$gene_id %in% unlist(operons_hogs_utf$Bar$gene_id)]
out_operon_bar <- bar_hogs[!bar_hogs$gene_id %in% unlist(operons_hogs_utf$Bar$gene_id)]
# Then evaluate whether genes in operons are more likely to be in operons in another species.
# How many genes are in an operon in one species but not the other species?
chisq_oki_osa <- rbind(
na.omit(in_operon_oki$utf_word) %in% unlist(in_operon_osa$utf_word) |> table(),
na.omit(in_operon_oki$utf_word) %in% unlist(out_operon_osa$utf_word) |> table(),
na.omit(out_operon_oki$utf_word) %in% unlist(in_operon_osa$utf_word) |> table(),
na.omit(out_operon_oki$utf_word) %in% unlist(out_operon_osa$utf_word) |> table()
) |> as.data.frame()
rownames(chisq_oki_osa) <- c("inOki_inOsa", "inOki_outOsa", "outOki_inOsa", "outOki_outOsa")
chisq_oki_osa## FALSE TRUE
## inOki_inOsa 1911 3607
## inOki_outOsa 3737 1781
## outOki_inOsa 4206 1474
## outOki_outOsa 1619 4061
# Plot
p1 <- chisq_oki_osa |> tibble::rownames_to_column("operon_status") |> tidyr::pivot_longer(cols=2:3) |> dplyr::rename(n_genes=value, value=name) |> ggplot() + aes(y=operon_status, x=n_genes, fill=value) + geom_bar(stat='identity') + ggtitle("Oki-Osa: Homologous genes by operon membership")
p1
# Stats
chisq_oki_osa_test <- chisq.test(chisq_oki_osa)
lapply(chisq_oki_osa_test, \(x) x)## $statistic
## X-squared
## 3567.22
##
## $parameter
## df
## 3
##
## $p.value
## [1] 0
##
## $method
## [1] "Pearson's Chi-squared test"
##
## $data.name
## [1] "chisq_oki_osa"
##
## $observed
## FALSE TRUE
## inOki_inOsa 1911 3607
## inOki_outOsa 3737 1781
## outOki_inOsa 4206 1474
## outOki_outOsa 1619 4061
##
## $expected
## FALSE TRUE
## inOki_inOsa 2826.755 2691.245
## inOki_outOsa 2826.755 2691.245
## outOki_inOsa 2909.745 2770.255
## outOki_outOsa 2909.745 2770.255
##
## $residuals
## FALSE TRUE
## inOki_inOsa -17.22405 17.65237
## inOki_outOsa 17.12040 -17.54614
## outOki_inOsa 24.03052 -24.62809
## outOki_outOsa -23.92836 24.52338
##
## $stdres
## FALSE TRUE
## inOki_inOsa -28.41021 28.41021
## inOki_outOsa 28.23924 -28.23924
## outOki_inOsa 39.82873 -39.82873
## outOki_outOsa -39.65940 39.65940## $statistic
## X-squared
## 3679.945
##
## $argument
## df
## 3
##
## $p.value
## [1] 0
##
## $method
## [1] "G-test of independence"
##
## $data.name
## [1] "chisq_oki_osa"
##
## $observed
## FALSE TRUE
## inOki_inOsa 1911 3607
## inOki_outOsa 3737 1781
## outOki_inOsa 4206 1474
## outOki_outOsa 1619 4061
##
## $expected
## FALSE TRUE
## inOki_inOsa 2826.755 2691.245
## inOki_outOsa 2826.755 2691.245
## outOki_inOsa 2909.745 2770.255
## outOki_outOsa 2909.745 2770.255
##
## $residuals
## FALSE TRUE
## inOki_inOsa -17.22405 17.65237
## inOki_outOsa 17.12040 -17.54614
## outOki_inOsa 24.03052 -24.62809
## outOki_outOsa -23.92836 24.52338
##
## $stdres
## FALSE TRUE
## inOki_inOsa -28.41021 28.41021
## inOki_outOsa 28.23924 -28.23924
## outOki_inOsa 39.82873 -39.82873
## outOki_outOsa -39.65940 39.65940
chisq_oki_bar <- rbind(
na.omit(in_operon_oki$utf_word) %in% unlist(in_operon_bar$utf_word) |> table(),
na.omit(in_operon_oki$utf_word) %in% unlist(out_operon_bar$utf_word) |> table(),
na.omit(out_operon_oki$utf_word) %in% unlist(in_operon_bar$utf_word) |> table(),
na.omit(out_operon_oki$utf_word) %in% unlist(out_operon_bar$utf_word) |> table()
) |> as.data.frame()
rownames(chisq_oki_bar) <- c("inOki_inBar", "inOki_outBar", "outOki_inBar", "outOki_outBar")
chisq_oki_bar## FALSE TRUE
## inOki_inBar 1885 3633
## inOki_outBar 3794 1724
## outOki_inBar 4362 1318
## outOki_outBar 1479 4201
# Plot
p2 <- chisq_oki_bar |> tibble::rownames_to_column("operon_status") |> tidyr::pivot_longer(cols=2:3) |> dplyr::rename(n_genes=value, value=name) |> ggplot() + aes(y=operon_status, x=n_genes, fill=value) + geom_bar(stat='identity') + ggtitle("Oki-Bar: Homologous genes by operon membership")
p2
# Stats
chisq_oki_bar_test <- chisq.test(chisq_oki_bar)
lapply(chisq_oki_bar_test, \(x) x)## $statistic
## X-squared
## 4251.04
##
## $parameter
## df
## 3
##
## $p.value
## [1] 0
##
## $method
## [1] "Pearson's Chi-squared test"
##
## $data.name
## [1] "chisq_oki_bar"
##
## $observed
## FALSE TRUE
## inOki_inBar 1885 3633
## inOki_outBar 3794 1724
## outOki_inBar 4362 1318
## outOki_outBar 1479 4201
##
## $expected
## FALSE TRUE
## inOki_inBar 2838.335 2679.665
## inOki_outBar 2838.335 2679.665
## outOki_inBar 2921.665 2758.335
## outOki_outBar 2921.665 2758.335
##
## $residuals
## FALSE TRUE
## inOki_inBar -17.89427 18.41643
## inOki_outBar 17.93798 -18.46143
## outOki_inBar 26.64701 -27.42459
## outOki_outBar -26.69010 27.46894
##
## $stdres
## FALSE TRUE
## inOki_inBar -29.57939 29.57939
## inOki_outBar 29.65166 -29.65166
## outOki_inBar 44.26069 -44.26069
## outOki_outBar -44.33226 44.33226## $statistic
## X-squared
## 4420.423
##
## $argument
## df
## 3
##
## $p.value
## [1] 0
##
## $method
## [1] "G-test of independence"
##
## $data.name
## [1] "chisq_oki_bar"
##
## $observed
## FALSE TRUE
## inOki_inBar 1885 3633
## inOki_outBar 3794 1724
## outOki_inBar 4362 1318
## outOki_outBar 1479 4201
##
## $expected
## FALSE TRUE
## inOki_inBar 2838.335 2679.665
## inOki_outBar 2838.335 2679.665
## outOki_inBar 2921.665 2758.335
## outOki_outBar 2921.665 2758.335
##
## $residuals
## FALSE TRUE
## inOki_inBar -17.89427 18.41643
## inOki_outBar 17.93798 -18.46143
## outOki_inBar 26.64701 -27.42459
## outOki_outBar -26.69010 27.46894
##
## $stdres
## FALSE TRUE
## inOki_inBar -29.57939 29.57939
## inOki_outBar 29.65166 -29.65166
## outOki_inBar 44.26069 -44.26069
## outOki_outBar -44.33226 44.33226
chisq_osa_bar <- rbind(
na.omit(in_operon_osa$utf_word) %in% unlist(in_operon_bar$utf_word) |> table(),
na.omit(in_operon_osa$utf_word) %in% unlist(out_operon_bar$utf_word) |> table(),
na.omit(out_operon_osa$utf_word) %in% unlist(in_operon_bar$utf_word) |> table(),
na.omit(out_operon_osa$utf_word) %in% unlist(out_operon_bar$utf_word) |> table()
) |> as.data.frame()
rownames(chisq_osa_bar) <- c("inOsa_inBar", "inOsa_outBar", "outOsa_inBar", "outOsa_outBar")
chisq_osa_bar## FALSE TRUE
## inOsa_inBar 1492 3750
## inOsa_outBar 3841 1401
## outOsa_inBar 4678 1225
## outOsa_outBar 1263 4640
p3 <- chisq_osa_bar |> tibble::rownames_to_column("operon_status") |> tidyr::pivot_longer(cols=2:3) |> dplyr::rename(n_genes=value, value=name) |> ggplot() + aes(y=operon_status, x=n_genes, fill=value) + geom_bar(stat='identity') + ggtitle("Osa-Bar: Homologous genes by operon membership")
p3
# Stats
chisq_osa_bar_test <- chisq.test(chisq_osa_bar)
lapply(chisq_osa_bar_test, \(x) x)## $statistic
## X-squared
## 6057.989
##
## $parameter
## df
## 3
##
## $p.value
## [1] 0
##
## $method
## [1] "Pearson's Chi-squared test"
##
## $data.name
## [1] "chisq_osa_bar"
##
## $observed
## FALSE TRUE
## inOsa_inBar 1492 3750
## inOsa_outBar 3841 1401
## outOsa_inBar 4678 1225
## outOsa_outBar 1263 4640
##
## $expected
## FALSE TRUE
## inOsa_inBar 2651.337 2590.663
## inOsa_outBar 2651.337 2590.663
## outOsa_inBar 2985.663 2917.337
## outOsa_outBar 2985.663 2917.337
##
## $residuals
## FALSE TRUE
## inOsa_inBar -22.51528 22.77741
## inOsa_outBar 23.10422 -23.37321
## outOsa_inBar 30.97181 -31.33240
## outOsa_outBar -31.52680 31.89385
##
## $stdres
## FALSE TRUE
## inOsa_inBar -36.62172 36.62172
## inOsa_outBar 37.57965 -37.57965
## outOsa_inBar 51.38246 -51.38246
## outOsa_outBar -52.30320 52.30320## $statistic
## X-squared
## 6391.668
##
## $argument
## df
## 3
##
## $p.value
## [1] 0
##
## $method
## [1] "G-test of independence"
##
## $data.name
## [1] "chisq_osa_bar"
##
## $observed
## FALSE TRUE
## inOsa_inBar 1492 3750
## inOsa_outBar 3841 1401
## outOsa_inBar 4678 1225
## outOsa_outBar 1263 4640
##
## $expected
## FALSE TRUE
## inOsa_inBar 2651.337 2590.663
## inOsa_outBar 2651.337 2590.663
## outOsa_inBar 2985.663 2917.337
## outOsa_outBar 2985.663 2917.337
##
## $residuals
## FALSE TRUE
## inOsa_inBar -22.51528 22.77741
## inOsa_outBar 23.10422 -23.37321
## outOsa_inBar 30.97181 -31.33240
## outOsa_outBar -31.52680 31.89385
##
## $stdres
## FALSE TRUE
## inOsa_inBar -36.62172 36.62172
## inOsa_outBar 37.57965 -37.57965
## outOsa_inBar 51.38246 -51.38246
## outOsa_outBar -52.30320 52.30320
( p1 + p2 + p3 )
Session information
## R version 4.3.1 (2023-06-16)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Debian GNU/Linux 12 (bookworm)
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.11.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.11.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: Etc/UTC
## tzcode source: system (glibc)
##
## attached base packages:
## [1] grid stats4 stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] BSgenome.Oidioi.genoscope.OdB3_1.0.0
## [2] BSgenome.Oidioi.OIST.AOM.5.5f_1.0.1
## [3] BSgenome.Oidioi.OIST.KUM.M3.7f_1.0.1
## [4] BSgenome.Oidioi.OIST.Bar2.p4_1.0.1
## [5] BSgenome.Oidioi.OIST.OSKA2016v1.9_1.0.0
## [6] BSgenome.Oidioi.OIST.OKI2018.I69_1.0.1
## [7] stringdist_0.9.10
## [8] ggvenn_0.1.10
## [9] dplyr_1.1.3
## [10] patchwork_1.1.2
## [11] GenomicFeatures_1.52.1
## [12] AnnotationDbi_1.62.2
## [13] Biobase_2.60.0
## [14] OikScrambling_5.1.0
## [15] ggplot2_3.4.4
## [16] GenomicBreaks_0.14.3
## [17] BSgenome_1.68.0
## [18] rtracklayer_1.60.1
## [19] Biostrings_2.68.1
## [20] XVector_0.40.0
## [21] GenomicRanges_1.52.1
## [22] GenomeInfoDb_1.36.4
## [23] IRanges_2.34.1
## [24] S4Vectors_0.38.2
## [25] BiocGenerics_0.46.0
##
## loaded via a namespace (and not attached):
## [1] splines_4.3.1 BiocIO_1.10.0
## [3] filelock_1.0.2 bitops_1.0-7
## [5] tibble_3.2.1 R.oo_1.25.0
## [7] polyclip_1.10-4 XML_3.99-0.15
## [9] rpart_4.1.19 lifecycle_1.0.3
## [11] rprojroot_2.0.4 lattice_0.20-45
## [13] MASS_7.3-58.2 backports_1.4.1
## [15] magrittr_2.0.3 Hmisc_5.1-1
## [17] sass_0.4.7 rmarkdown_2.25
## [19] jquerylib_0.1.4 yaml_2.3.7
## [21] plotrix_3.8-3 eulerr_7.0.0
## [23] DBI_1.1.3 CNEr_1.36.0
## [25] minqa_1.2.6 RColorBrewer_1.1-3
## [27] ade4_1.7-22 abind_1.4-5
## [29] zlibbioc_1.46.0 purrr_1.0.2
## [31] R.utils_2.12.2 RCurl_1.98-1.13
## [33] nnet_7.3-18 pracma_2.4.2
## [35] rappdirs_0.3.3 GenomeInfoDbData_1.2.10
## [37] gdata_3.0.0 annotate_1.78.0
## [39] pkgdown_2.0.7 codetools_0.2-19
## [41] DelayedArray_0.26.7 xml2_1.3.5
## [43] tidyselect_1.2.0 shape_1.4.6
## [45] farver_2.1.1 lme4_1.1-35.1
## [47] BiocFileCache_2.8.0 matrixStats_1.0.0
## [49] base64enc_0.1-3 GenomicAlignments_1.36.0
## [51] jsonlite_1.8.7 mitml_0.4-5
## [53] Formula_1.2-5 survival_3.5-3
## [55] iterators_1.0.14 systemfonts_1.0.5
## [57] polylabelr_0.2.0 foreach_1.5.2
## [59] progress_1.2.2 tools_4.3.1
## [61] ragg_1.2.5 Rcpp_1.0.11
## [63] glue_1.6.2 gridExtra_2.3
## [65] pan_1.9 xfun_0.41
## [67] MatrixGenerics_1.12.3 EBImage_4.42.0
## [69] withr_2.5.2 fastmap_1.1.1
## [71] boot_1.3-28.1 fansi_1.0.5
## [73] digest_0.6.33 R6_2.5.1
## [75] mice_3.16.0 textshaping_0.3.7
## [77] colorspace_2.1-0 GO.db_3.17.0
## [79] gtools_3.9.4 poweRlaw_0.70.6
## [81] jpeg_0.1-10 biomaRt_2.56.1
## [83] RSQLite_2.3.3 weights_1.0.4
## [85] AMR_2.1.0 R.methodsS3_1.8.2
## [87] utf8_1.2.4 tidyr_1.3.0
## [89] generics_0.1.3 data.table_1.14.8
## [91] prettyunits_1.2.0 httr_1.4.7
## [93] htmlwidgets_1.6.2 S4Arrays_1.0.6
## [95] pkgconfig_2.0.3 gtable_0.3.4
## [97] blob_1.2.4 htmltools_0.5.7
## [99] fftwtools_0.9-11 plyranges_1.20.0
## [101] scales_1.2.1 png_0.1-8
## [103] knitr_1.45 heatmaps_1.24.0
## [105] rstudioapi_0.15.0 tzdb_0.4.0
## [107] reshape2_1.4.4 rjson_0.2.21
## [109] curl_5.1.0 checkmate_2.3.0
## [111] nlme_3.1-162 nloptr_2.0.3
## [113] cachem_1.0.8 stringr_1.5.0
## [115] KernSmooth_2.23-20 parallel_4.3.1
## [117] genoPlotR_0.8.11 foreign_0.8-84
## [119] restfulr_0.0.15 desc_1.4.2
## [121] pillar_1.9.0 vctrs_0.6.4
## [123] jomo_2.7-6 dbplyr_2.3.3
## [125] xtable_1.8-4 cluster_2.1.4
## [127] htmlTable_2.4.2 evaluate_0.23
## [129] readr_2.1.4 cli_3.6.1
## [131] locfit_1.5-9.8 compiler_4.3.1
## [133] Rsamtools_2.16.0 rlang_1.1.2
## [135] crayon_1.5.2 labeling_0.4.3
## [137] plyr_1.8.9 fs_1.6.3
## [139] stringi_1.7.12 BiocParallel_1.34.2
## [141] munsell_0.5.0 tiff_0.1-11
## [143] glmnet_4.1-8 Matrix_1.5-3
## [145] hms_1.1.3 bit64_4.0.5
## [147] KEGGREST_1.40.1 highr_0.10
## [149] SummarizedExperiment_1.30.2 broom_1.0.5
## [151] memoise_2.0.1 bslib_0.5.1
## [153] bit_4.0.5