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OikScrambling
5.1.0
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Data load
Supplemental material
Figure 1B and S1 DNA line plots
Figure 1C chromosome parallel plots
Figure 1D scrambling index
Figure 2A and S1 orthogroup dot plots and synteny block histograms
Figure 3C breakpoint feature density plots
Figure 4B and 4C operon barplots
Figure 5 genome-wide feature patterns
Figure 7A–D DNA line plots
Figure 7E breakpoint number barplots
Articles
Scaffolding of the AOM-5 genome
Scaffolding of the OdB3 genome
Conserved non-coding elements
Chromosome-scale feature density plots
Modifying coalescent cutoffs
Regions interrupting colinearity
Distance Measures
Genomic features of the breakpoints
Genomic features of the breakpoints (heatmaps)
Inversions
Scaffolding of the KUM-M3 genome
Load genomic break data
Operon conservation analysis
Operon detection and counting
Orthogroup syntenies
Alignment line plots, whole genomes
Region of interest: PAC3
Motif search and analysis
Whole-chromosome parallel plots
Width of the aligned and mapped regions.
Regions of interest
Repeat regions
Scaling breakpoints
Segment movement distances
Alignment line plots, 10×10 Mbp windows
Transcription factor binding sites
Tandem site duplications
Translocations
Changelog
Reference
License
YEAR: 2020 COPYRIGHT HOLDER: CW and CP, or maybe just OIST? ORGANIZATION: OIST
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