Package index

All functions

activity_driven_temporalnetwork()

Activity-driven network model of Cai, Nie & Holme (2024).

acyclic_network()

Create an acyclic network

adjacencylist_network()

Create a network from an adjacency list

adjacencylist_weightednetwork()

Create a network from an adjacency list

barabasialbert_network()

Create an Barabasi-Albert network

brownian_proximity_temporalnetwork()

Create a Brownian proximity network

configmodel_clustered_network()

Create an network with the specified node degrees and clustering

configmodel_network()

Create an network with the specified node degrees

cubiclattice2d_network() cubiclattice3d_network() cubiclattice4d_network() cubiclattice5d_network() cubiclattice6d_network() cubiclattice7d_network() cubiclattice8d_network()

Create an cubic lattice

empirical_contact_temporalnetwork()

Empirical temporal network comprising short contacts between nodes

empirical_network()

Creates a network for an adjacency list stored in a file

empirical_weightednetwork()

Creates a weighted network for an adjacency list stored in a file

erdos_renyi_network() erdos_reyni_network()

Create a Erdös-Rényi network

erdos_renyi_temporalnetwork()

Create a temporal Erdös-Rényi network

erdos_renyi_weightednetwork()

Create a weighted Erdös-Rényi network

fully_connected_network()

Create a fully-connected network

network_is_undirected() network_is_simple() network_is_weighted() network_is_temporal() network_size() network_outdegree() network_neighbour() network_neighbour_weight() network_adjacencylist() weighted_network_adjacencylist() network_bounds() network_coordinates()

Querying properties of networks

network_reproduction_matrix()

Computes the reproduction matrix \(M\), reproduction number \(R\), and other statistics related to these quantites.

network_types

Creating networks

packaged_empirical_network()

Downloads a packages empirical network and returns the file path

simulation()

Create a simulation

simulation_transmissiontime() simulation_resettime() simulation_network() simulation_graph() simulation_options() simulation_isinfected() simulation_ninfected() simulation_addinfections()

Running simulations and querying their state and properties

simulation_run()

Runs a simulation until a stopping condition occurs

simulation_step()

Outdated version of simulation_run

sirx_temporalnetwork()

Network SIRX model

exponential_time() lognormal_time() gamma_time() weibull_time() polynomial_rate_time() infectiousness_time() deterministic_time()

Creating time distributions

time_sample() time_density() time_hazardrate() time_survivalprobability() time_survivalquantile()

Functions that operate on transmission/recovery/reset time distributions

userdefined_time()

User-defined time distributions

wattsstrogatz_network()

Create an Watts-Strogatz network