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Show inversions and their flanking blocks.

Source: R/flagInversions.R
showInversions.Rd

Show inversions and their flanking blocks.

Usage

showInversions(gb, rename = TRUE)

Arguments

gb

A GBreaks object processed with flagInversions.

rename

Replace range names by their numeric order before subsetting.

Value

Returns the GBreaks object in which all ranges that are not part of an inversion triplet have been discarded. If the object was missing the inv metadata column, return the object after discarding all of its ranges.

See also

Other Inversion functions: filterDoubleInversions(), filterInversions(), flagDoubleInversions(), flagInversions(), flagPairs(), flipInversions(), leftInversionGaps()

Examples

showInversions(flagInversions(exampleInversion))
#> GBreaks object with 3 ranges and 2 metadata columns:
#>     seqnames    ranges strand |        query   inv
#>        <Rle> <IRanges>  <Rle> |    <GRanges> <Rle>
#>   1     chrA   100-190      + | chrB:100-190  TRUE
#>   2     chrA   210-291      - | chrB:210-291 FALSE
#>   3     chrA   301-400      + | chrB:301-400 FALSE
#>   -------
#>   seqinfo: 1 sequence from an unspecified genome