Isolate the left-side gaps in inversions

Isolate the left-side gaps in inversions

Usage

leftInversionGaps(gb)

Arguments

gb

A GBreaks object.

Value

Returns a GenomicRanges::GRanges object representing the left-side gaps in the GBreaks object.

See also

Other Inversion functions: filterDoubleInversions(), filterInversions(), flagDoubleInversions(), flagInversions(), flagPairs(), flipInversions(), removeDoubleInversions(), removeInversions(), showInversions()

Examples

leftInversionGaps(flagInversions(exampleInversion))
#> GRanges object with 1 range and 0 metadata columns:
#>       seqnames    ranges strand
#>          <Rle> <IRanges>  <Rle>
#>   [1]     chrA   191-209      *
#>   -------
#>   seqinfo: 1 sequence from an unspecified genome