Convert to binned matrix of hits
Value
A matrix object.
See also
Other Converter functions:
gb2comp(),
gb2dna_seg(),
gb2xlim(),
gr2dna_seg()
Examples
m <- GBreaksToMatrix(exampleColinear5, ntile = 10)
m
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] 0 0 0 0 0 0 0 0 0 0
#> [2,] 0 1 1 1 0 0 0 0 0 0
#> [3,] 0 1 1 1 0 0 0 0 0 0
#> [4,] 0 1 1 1 1 0 0 0 0 0
#> [5,] 0 0 0 1 1 1 1 0 0 0
#> [6,] 0 0 0 0 1 1 1 0 0 0
#> [7,] 0 0 0 0 1 1 1 1 1 0
#> [8,] 0 0 0 0 0 0 1 1 1 0
#> [9,] 0 0 0 0 0 0 1 1 1 1
#> [10,] 0 0 0 0 0 0 0 0 1 1
image(m)
makeOxfordPlots(exampleColinear5)
#> Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
#> ℹ Please use tidy evaluation idioms with `aes()`.
#> ℹ See also `vignette("ggplot2-in-packages")` for more information.
#> ℹ The deprecated feature was likely used in the GenomicBreaks package.
#> Please report the issue to the authors.
#> Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
#> ℹ Please use `linewidth` instead.
#> ℹ The deprecated feature was likely used in the GenomicBreaks package.
#> Please report the issue to the authors.
