Convert GBreaks object to a list of dna_seg objects

Convert GBreaks object to a list of dna_seg objects

Usage

gb2dna_seg(gb, ...)

Arguments

gb

A GenomicRanges::GRanges or a GBreaks object.

...

Extra arguments passed to dna_seg().

Value

Returns a list of two genoPlotR::dna_seg objects, respectively for the target ranges the query ranges.

See also

Other genoPlotR functions: gb2comp(), gb2xlim(), gr2dna_seg(), plotApairOfChrs()

Other Converter functions: GBreaksToMatrix(), gb2comp(), gb2xlim(), gr2dna_seg()

Author

Charles Plessy

Examples

gb2dna_seg(exampleInversion)
#> $target
#>             name start end strand  col fill lty lwd pch cex gene_type
#> 1 chrA:100-190:+   100 190      1 blue blue   1   1   8   1    blocks
#> 2 chrA:210-291:-   210 291      1 blue blue   1   1   8   1    blocks
#> 3 chrA:301-400:+   301 400      1 blue blue   1   1   8   1    blocks
#> 
#> $query
#>           name start end strand  col fill lty lwd pch cex gene_type
#> 1 chrB:100-190   100 190      1 blue blue   1   1   8   1    blocks
#> 2 chrB:210-291   210 291     -1 blue blue   1   1   8   1    blocks
#> 3 chrB:301-400   301 400      1 blue blue   1   1   8   1    blocks
#>