Sequence name with strand information — strandNames • GenomicBreaks

Extract sequence names and pastes strand information to it.

Usage

strandNames(gb, flip = FALSE, query = FALSE)

Arguments

gb: A GBreaks object or a GenomicRanges::GRangesList of GBreaks objects.
flip: Flip the strand names.
query: Work on the query genome.

Value

Returns a character vector, or a list of character vectors if the input was a GenomicRanges::GRangesList.

See also

Other scaffolding functions: flipStrandNames(), longestMatchesInTarget(), mergeSeqLevels(), scaffoldByFlipAndMerge(), splitSeqLevel()

Author

Charles Plessy

Examples

strandNames(exampleColinear)
#> [1] "chrA+" "chrA+"
strandNames(exampleColinear, query = TRUE)
#> [1] "chrB+" "chrB+"