Range method for GBreaks objects

This is a range method for GBreaks objects, that will run GenomicRanges::range on its target and query ranges and will return a new GBreaks object.

Usage

range_GBreaks(
  x,
  ...,
  with.revmap = FALSE,
  ignore.strand = FALSE,
  na.rm = FALSE
)

# S4 method for class 'GBreaks'
range(x, ..., with.revmap = FALSE, ignore.strand = FALSE, na.rm = FALSE)

Arguments

x

A GBreaks object.

...

etc

with.revmap

FALSE

ignore.strand

FALSE

na.rm

FALSE)

Value

tbd

Note

range unconditionally ignores strand in GBreaks objects.

See also

Other Bioconductor API functions: GBreaks-class, as(), getSeq(), pairwiseAlignment(), reverse(), subsetByOverlaps_GBreaks()

Examples

range(exampleColinear3)
#> GBreaks object with 1 range and 1 metadata column:
#>       seqnames    ranges strand |        query
#>          <Rle> <IRanges>  <Rle> |    <GRanges>
#>   [1]     chrA   100-400      * | chrB:100-400
#>   -------
#>   seqinfo: 1 sequence from an unspecified genome
range(exampleDeletion)
#> GBreaks object with 2 ranges and 1 metadata column:
#>       seqnames    ranges strand |        query
#>          <Rle> <IRanges>  <Rle> |    <GRanges>
#>   [1]     chrA   100-400      * | chrB:100-300
#>   [2]     chrA   201-300      * | chrC:401-500
#>   -------
#>   seqinfo: 1 sequence from an unspecified genome