Example Substitution Matrices

The probability matrix is loaded from the file extdata/example.train distributed in this package.

Usage

exampleSubstitutionMatrix

Format

An object of class matrix (inherits from array) with 6 rows and 6 columns.

Details

The count matrix is derived from an alignment of Oikopleura dioica cryptic species…

See also

Other Alignment statistics: F81_distance(), GCequilibrium(), GCpressure(), GCproportion(), JC69_distance(), K80_distance(), P_distance(), T92_distance(), gapProportion()