The function returns a GRanges object containing the breakpoints, and metadata colummns of the associated point and averaged coverage over the breakpoint. The averaged coverage is conducted over a window, and the size of which is determined by the user. The coverage is with regards to the reference genome. Make the query genome the subject of the GRanges object to extract this information for the query genome.
Arguments
- gr_ob
GRanges object containing the pairwise alignment (or alignments of the desired genome)
- cov_gr
GRanges object of the point coverage of the reference (or desired) genome. Point coverage information should be in the metadata column "name"
- win
an even number indicating the range overage which the average coverage should be calculated.