The function plots the pairwise alignments from two of the reference scaffolds. This can be used as an aid in super-scaffolding. X-axis is the position on the reference scaffolds, and y-axis is aligned query scaffold.
Usage
align_scaf_plot_2(gr_ob, scaf)
Arguments
- gr_ob
GRanges object containing pairwise alignment
- scaf
A list containing two character objetcs of the names of the reference scaffolds you wish to compare on the plot
Value
scaffold alignment plot, comparing two reference scaffolds